Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10170094	0.89[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs10179410	0.94[JPT][hapmap]
rs10204756	1.00[JPT][hapmap]
rs10204820	1.00[JPT][hapmap]
rs1157026	0.85[JPT][hapmap]
rs11901880	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs12467730	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs12474883	0.85[JPT][hapmap]
rs12691577	0.85[JPT][hapmap]
rs12691578	0.85[JPT][hapmap]
rs13416050	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1429352	0.85[JPT][hapmap]
rs1864278	0.82[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap]
rs1864279	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs1978637	0.95[JPT][hapmap]
rs2016582	0.85[JPT][hapmap]
rs2033290	0.89[JPT][hapmap]
rs2220257	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4954676	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs4954861	0.81[JPT][hapmap]
rs6429850	0.94[JPT][hapmap]
rs7349387	0.94[JPT][hapmap]
rs984013	0.95[JPT][hapmap]
rs996598	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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