Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10170094	0.91[JPT][hapmap]
rs10179410	0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10204756	0.93[CHB][hapmap];0.95[JPT][hapmap]
rs10204820	0.82[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10928079	0.82[CEU][hapmap]
rs10928080	0.82[CEU][hapmap]
rs1157026	0.88[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12474883	0.85[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12614100	0.82[CEU][hapmap]
rs12691575	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12691577	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs12691578	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1346639	0.82[CEU][hapmap]
rs1429350	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1429352	0.94[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs1429359	0.89[JPT][hapmap]
rs1864278	0.80[CHD][hapmap];0.95[JPT][hapmap]
rs1978637	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1991540	0.82[CEU][hapmap];0.81[LWK][hapmap]
rs2029156	0.84[ASN][1000 genomes]
rs4954676	0.82[JPT][hapmap]
rs6429850	0.88[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7349387	0.88[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7565456	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs984013	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs996598	0.88[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141649200-141661800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:141653600-141662800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:141655000-141658600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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