Variant report

Variant	rs2029156
Chromosome Location	chr2:141619412-141619413
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10170094	0.92[ASN][1000 genomes]
rs10179410	0.97[ASN][1000 genomes]
rs1157026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12474883	0.95[ASN][1000 genomes]
rs12691575	0.88[ASN][1000 genomes]
rs1429350	0.81[ASN][1000 genomes]
rs1429352	0.90[ASN][1000 genomes]
rs2033290	0.84[ASN][1000 genomes]
rs35591904	1.00[AFR][1000 genomes]
rs6429850	0.97[ASN][1000 genomes]
rs7349387	0.97[ASN][1000 genomes]
rs7565456	0.88[ASN][1000 genomes]
rs996598	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141615800-141620400	Weak transcription	Primary T cells from cord blood	blood
2	chr2:141618600-141619800	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links