Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10170094	0.81[JPT][hapmap]
rs10179410	0.88[CHB][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10204756	0.94[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap]
rs10204820	0.87[CHB][hapmap]
rs1157026	0.88[CHB][hapmap]
rs11901880	0.86[JPT][hapmap]
rs12463802	0.87[CHB][hapmap]
rs12474883	0.88[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs12691575	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12691577	0.94[CHB][hapmap];0.85[YRI][hapmap]
rs12691578	0.94[CHB][hapmap];0.85[YRI][hapmap]
rs13416050	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs1429352	0.94[CHB][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs1835167	0.89[YRI][hapmap]
rs1864278	0.86[JPT][hapmap]
rs1864279	0.85[JPT][hapmap]
rs1978637	0.94[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap]
rs2016582	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs2029156	0.81[ASN][1000 genomes]
rs2033290	0.87[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs4954861	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs6429850	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7349387	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.83[ASN][1000 genomes]
rs7565456	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs984013	0.94[CHB][hapmap];0.85[YRI][hapmap]
rs996598	0.88[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141648800-141654800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:141649000-141653200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:141649200-141661800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:141649800-141651600	Enhancers	Dnd41	blood
5	chr2:141649800-141652000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:141649800-141652000	Enhancers	HMEC	breast
7	chr2:141650000-141651600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:141650200-141651200	Enhancers	Primary T cells from cord blood	blood
9	chr2:141650200-141651600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr2:141650200-141654200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:141650400-141650800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:141650600-141651000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:141650600-141651600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr2:141650600-141651600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:141650600-141652200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr2:141650600-141652800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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