Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10170094	0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10179410	0.94[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs10204756	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs1157026	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs11901880	0.86[JPT][hapmap]
rs12474883	0.94[CHB][hapmap];0.89[ASN][1000 genomes]
rs12691575	0.83[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12691577	0.88[CHB][hapmap]
rs12691578	0.88[CHB][hapmap]
rs13416050	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1429350	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1429352	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs1864278	0.86[JPT][hapmap]
rs1864279	0.85[JPT][hapmap]
rs1978637	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs2016582	0.86[JPT][hapmap]
rs2029156	0.88[ASN][1000 genomes]
rs2033290	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4954861	0.86[JPT][hapmap]
rs6429850	0.94[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7349387	0.94[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs984013	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs996598	0.94[CHB][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141619800-141626400	Weak transcription	Liver	Liver

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