Variant report

Variant	rs2222032
Chromosome Location	chr2:180438264-180438265
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180430735..180433402-chr2:180437315..180438959,2	K562	blood:
2	chr2:180432898..180435299-chr2:180436874..180439491,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10169569	0.85[JPT][hapmap]
rs11674582	0.85[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11683272	0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11688895	0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11894850	0.85[JPT][hapmap]
rs12693194	0.85[JPT][hapmap]
rs12991713	0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13030456	0.85[JPT][hapmap]
rs13035596	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1399692	0.85[JPT][hapmap]
rs1515297	0.85[JPT][hapmap]
rs1515298	0.85[JPT][hapmap]
rs16866782	0.85[JPT][hapmap]
rs17816271	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs2203459	0.85[JPT][hapmap]
rs3112931	0.82[JPT][hapmap]
rs34017185	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35279307	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35821053	0.82[ASN][1000 genomes]
rs35860816	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36040054	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4267476	0.85[JPT][hapmap]
rs4530328	0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6433796	0.85[JPT][hapmap]
rs6722937	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71425634	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs71425635	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7579911	0.85[JPT][hapmap]
rs868271	0.85[JPT][hapmap]
rs868273	0.85[JPT][hapmap]
rs868274	0.85[JPT][hapmap]
rs999000	0.85[JPT][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180433000-180440800	Weak transcription	Gastric	stomach
2	chr2:180433000-180445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180434000-180438600	Enhancers	HepG2	liver
4	chr2:180435000-180438600	Weak transcription	Osteobl	bone
5	chr2:180435000-180438800	Weak transcription	Fetal Lung	lung
6	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:180435400-180438600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
9	chr2:180435800-180438400	Enhancers	Liver	Liver
10	chr2:180436200-180439000	Weak transcription	Fetal Intestine Large	intestine
11	chr2:180437600-180445200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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