Variant report

Variant	rs6722937
Chromosome Location	chr2:180404353-180404354
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180396502..180399490-chr2:180403575..180405915,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10169569	0.86[JPT][hapmap]
rs11674582	1.00[ASW][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.80[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11683272	0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11688895	0.86[JPT][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894850	0.86[JPT][hapmap]
rs12693194	0.86[JPT][hapmap]
rs12991713	0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002104	0.91[EUR][1000 genomes]
rs13030456	0.86[JPT][hapmap]
rs13035596	0.86[JPT][hapmap];1.00[ASN][1000 genomes]
rs1399692	0.86[JPT][hapmap]
rs1515297	0.86[JPT][hapmap]
rs1515298	0.86[JPT][hapmap]
rs16866782	0.86[JPT][hapmap]
rs16866897	1.00[CHB][hapmap]
rs17816271	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2203459	0.86[JPT][hapmap]
rs2222032	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3112931	0.84[JPT][hapmap]
rs34017185	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35279307	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35821053	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35860816	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36040054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4267476	0.86[JPT][hapmap]
rs4530328	1.00[ASW][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.92[TSI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433796	0.86[JPT][hapmap]
rs71425634	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71425635	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71425637	0.89[EUR][1000 genomes]
rs7579911	0.86[JPT][hapmap]
rs868271	0.86[JPT][hapmap]
rs868273	0.86[JPT][hapmap]
rs868274	0.86[JPT][hapmap]
rs999000	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875470	chr2:180400021-180432529	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv523865	chr2:180403128-180426764	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180403200-180408000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:180403400-180407600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180403800-180407400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:180403800-180408000	Weak transcription	Osteobl	bone
5	chr2:180403800-180408600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:180403800-180408600	Weak transcription	Fetal Kidney	kidney
7	chr2:180403800-180409800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr2:180404000-180408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:180404000-180410000	Strong transcription	Liver	Liver
10	chr2:180404200-180409800	Weak transcription	Gastric	stomach

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