Variant report

Variant	rs2222033
Chromosome Location	chr2:180556229-180556230
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2056109	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3112974	0.85[YRI][hapmap]
rs6736736	0.85[YRI][hapmap]
rs7421166	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7424112	0.91[EUR][1000 genomes]
rs932116	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180544000-180557200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:180552400-180566400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180552600-180556800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:180552800-180557400	Weak transcription	NHDF-Ad	bronchial
6	chr2:180553600-180558600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:180555400-180557800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:180555600-180557600	Enhancers	NHLF	lung
9	chr2:180555600-180557800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:180556200-180556400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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