Variant report

Variant	rs2225778
Chromosome Location	chr13:110658084-110658085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110437517..110439697-chr13:110657006..110658602,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1335809	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2893357	0.92[ASN][1000 genomes]
rs6492235	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7332343	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7337597	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982180	0.82[YRI][hapmap]
rs9521573	0.82[ASN][1000 genomes]
rs9521574	0.82[ASN][1000 genomes]
rs9559692	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9559703	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110651800-110662800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:110653600-110663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:110654000-110664000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:110654600-110658200	Weak transcription	NH-A	brain
5	chr13:110654800-110658600	Weak transcription	Osteobl	bone
6	chr13:110654800-110658800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:110655000-110658400	Weak transcription	A549	lung
8	chr13:110655000-110658600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:110655000-110662800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:110657200-110659200	Enhancers	HSMM	muscle
11	chr13:110657200-110659600	Enhancers	HMEC	breast
12	chr13:110657400-110658400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:110657400-110659000	Enhancers	NHDF-Ad	bronchial
14	chr13:110657800-110659200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:110657800-110659400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr13:110657800-110659400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:110657800-110659400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:110657800-110660200	Enhancers	Hela-S3	cervix
19	chr13:110658000-110659200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:110658000-110659200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:110658000-110659400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr13:110658000-110659400	Enhancers	NHEK	skin

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