Variant report

Variant	rs9521574
Chromosome Location	chr13:110668614-110668615
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2225778	0.82[ASN][1000 genomes]
rs2893357	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4773108	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7320069	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7332343	0.82[ASN][1000 genomes]
rs7337597	0.82[ASN][1000 genomes]
rs7984800	0.85[EUR][1000 genomes]
rs7992976	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9301424	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9301426	0.85[EUR][1000 genomes]
rs9301427	0.85[EUR][1000 genomes]
rs9521572	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9521573	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634476	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110659200-110669800	Weak transcription	Pancreas	Pancrea
2	chr13:110661200-110669400	Enhancers	HSMM	muscle
3	chr13:110662800-110671000	Enhancers	NHEK	skin
4	chr13:110663400-110670600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr13:110665400-110669800	Weak transcription	HUVEC	blood vessel
6	chr13:110665600-110669200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr13:110665600-110669400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:110665600-110669600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr13:110665800-110669400	Weak transcription	NH-A	brain
10	chr13:110665800-110669600	Weak transcription	Hela-S3	cervix
11	chr13:110666400-110670600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:110666600-110671000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:110666800-110668800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr13:110666800-110669600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:110666800-110670000	Enhancers	HMEC	breast
16	chr13:110666800-110670800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:110666800-110671000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:110667200-110671000	Enhancers	NHLF	lung
19	chr13:110667400-110669800	Weak transcription	Left Ventricle	heart
20	chr13:110667600-110669600	Enhancers	Osteobl	bone
21	chr13:110668000-110670000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr13:110668000-110671000	Enhancers	NHDF-Ad	bronchial
23	chr13:110668200-110669400	Enhancers	A549	lung
24	chr13:110668200-110669600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr13:110668200-110673400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr13:110668400-110669400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:110668400-110669400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr13:110668600-110668800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:110668600-110668800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:110668600-110668800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr13:110668600-110668800	Flanking Active TSS	HSMMtube	muscle
32	chr13:110668600-110669000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr13:110668600-110670800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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