Variant report

Variant	rs7320069
Chromosome Location	chr13:110670238-110670239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110651856..110654487-chr13:110670006..110672793,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2893357	0.92[EUR][1000 genomes]
rs4773108	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7984800	0.86[EUR][1000 genomes]
rs7992976	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9301424	0.85[EUR][1000 genomes]
rs9301426	0.86[EUR][1000 genomes]
rs9301427	0.86[EUR][1000 genomes]
rs9521572	0.85[EUR][1000 genomes]
rs9521573	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9521574	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9634476	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110662800-110671000	Enhancers	NHEK	skin
2	chr13:110663400-110670600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr13:110666400-110670600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:110666600-110671000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:110666800-110670800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:110666800-110671000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:110667200-110671000	Enhancers	NHLF	lung
8	chr13:110668000-110671000	Enhancers	NHDF-Ad	bronchial
9	chr13:110668200-110673400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:110668600-110670800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:110668800-110670800	Enhancers	HSMMtube	muscle
12	chr13:110669000-110670800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:110669200-110670800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr13:110669200-110671000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr13:110669200-110671600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:110669400-110670600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr13:110669400-110670600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:110669400-110670600	Flanking Active TSS	A549	lung
19	chr13:110669400-110670800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:110669400-110671000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:110669600-110670400	Flanking Active TSS	Osteobl	bone
22	chr13:110669600-110670600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr13:110669600-110670600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr13:110669600-110670600	Enhancers	Placenta Amnion	Placenta Amnion
25	chr13:110669600-110670800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:110669600-110671000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:110669800-110670400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr13:110669800-110670400	Flanking Active TSS	Hela-S3	cervix
29	chr13:110669800-110670400	Enhancers	HUVEC	blood vessel
30	chr13:110669800-110670600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:110669800-110670600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr13:110669800-110670600	Enhancers	Esophagus	oesophagus
33	chr13:110669800-110670600	Enhancers	Placenta	Placenta
34	chr13:110669800-110670600	Enhancers	Left Ventricle	heart
35	chr13:110669800-110670600	Enhancers	Pancreas	Pancrea
36	chr13:110669800-110671000	Enhancers	HSMM	muscle
37	chr13:110670000-110670400	Flanking Active TSS	HMEC	breast
38	chr13:110670000-110670400	Flanking Active TSS	NH-A	brain
39	chr13:110670000-110670600	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr13:110670000-110670600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr13:110670000-110670800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
42	chr13:110670000-110671200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr13:110670200-110670600	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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