Variant report

Variant	rs4773108
Chromosome Location	chr13:110669498-110669499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2893357	0.90[EUR][1000 genomes]
rs7320069	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7984800	0.84[EUR][1000 genomes]
rs7992976	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9301424	0.84[EUR][1000 genomes]
rs9301426	0.84[EUR][1000 genomes]
rs9301427	0.84[EUR][1000 genomes]
rs9521572	0.84[EUR][1000 genomes]
rs9521573	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9521574	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9634476	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110659200-110669800	Weak transcription	Pancreas	Pancrea
2	chr13:110662800-110671000	Enhancers	NHEK	skin
3	chr13:110663400-110670600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr13:110665400-110669800	Weak transcription	HUVEC	blood vessel
5	chr13:110665600-110669600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr13:110665800-110669600	Weak transcription	Hela-S3	cervix
7	chr13:110666400-110670600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:110666600-110671000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:110666800-110669600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:110666800-110670000	Enhancers	HMEC	breast
11	chr13:110666800-110670800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:110666800-110671000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:110667200-110671000	Enhancers	NHLF	lung
14	chr13:110667400-110669800	Weak transcription	Left Ventricle	heart
15	chr13:110667600-110669600	Enhancers	Osteobl	bone
16	chr13:110668000-110670000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr13:110668000-110671000	Enhancers	NHDF-Ad	bronchial
18	chr13:110668200-110669600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr13:110668200-110673400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr13:110668600-110670800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:110668800-110669600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:110668800-110669600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr13:110668800-110670800	Enhancers	HSMMtube	muscle
24	chr13:110669000-110670800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:110669200-110670800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:110669200-110671000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr13:110669200-110671600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr13:110669400-110669800	Flanking Active TSS	HSMM	muscle
29	chr13:110669400-110670000	Enhancers	NH-A	brain
30	chr13:110669400-110670600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr13:110669400-110670600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr13:110669400-110670600	Flanking Active TSS	A549	lung
33	chr13:110669400-110670800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr13:110669400-110671000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links