Variant report

Variant	rs9301426
Chromosome Location	chr13:110673536-110673537
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2225777	0.86[AFR][1000 genomes]
rs2893357	0.80[EUR][1000 genomes]
rs4773108	0.84[EUR][1000 genomes]
rs7320069	0.86[EUR][1000 genomes]
rs7984800	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7992976	0.86[EUR][1000 genomes]
rs9301424	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9301427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9521572	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9521573	0.84[EUR][1000 genomes]
rs9521574	0.85[EUR][1000 genomes]
rs9559710	0.86[AFR][1000 genomes]
rs9588072	0.84[AFR][1000 genomes]
rs9634476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110670600-110675000	Weak transcription	Left Ventricle	heart
2	chr13:110670600-110675600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:110670600-110675600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:110670800-110675800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:110670800-110675800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:110670800-110676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:110670800-110676000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:110671000-110674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:110671000-110676200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:110671000-110676200	Weak transcription	Osteobl	bone
11	chr13:110671000-110676400	Weak transcription	NH-A	brain
12	chr13:110671200-110674400	Weak transcription	HMEC	breast
13	chr13:110671200-110676000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr13:110672800-110673600	Enhancers	NHLF	lung
15	chr13:110673400-110673600	Enhancers	Fetal Muscle Leg	muscle
16	chr13:110673400-110673600	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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