Variant report

Variant	rs2227300
Chromosome Location	chr15:58832230-58832231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16940299	1.00[AMR][1000 genomes]
rs41292504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56365631	1.00[AMR][1000 genomes]
rs61664367	1.00[AMR][1000 genomes]
rs7175412	0.87[MKK][hapmap];1.00[AMR][1000 genomes]
rs7176030	1.00[AMR][1000 genomes]
rs73412742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016103	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv524098	chr15:58820978-58834391	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv522373	chr15:58829535-58836938	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58821600-58838000	Weak transcription	Right Atrium	heart
2	chr15:58826600-58837800	Weak transcription	Spleen	Spleen
3	chr15:58827600-58843400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:58828400-58837000	Weak transcription	Primary T cells from cord blood	blood
5	chr15:58828400-58838000	Weak transcription	HepG2	liver
6	chr15:58828600-58839000	Weak transcription	Pancreas	Pancrea
7	chr15:58828800-58837000	Weak transcription	Fetal Thymus	thymus
8	chr15:58829000-58847600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:58829400-58838200	Strong transcription	Liver	Liver
10	chr15:58830000-58832800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:58831200-58836200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:58831400-58835400	Weak transcription	K562	blood
13	chr15:58831800-58834000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr15:58832200-58832400	Enhancers	Fetal Kidney	kidney
15	chr15:58832200-58832800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:58832200-58838000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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