Variant report

Variant	rs2227704
Chromosome Location	chr7:100782840-100782841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100485453..100487476-chr7:100780458..100783244,2	K562	blood:
2	chr7:100769788..100771948-chr7:100781590..100784557,3	MCF-7	breast:
3	chr7:100782040..100783766-chr7:100812650..100814616,2	K562	blood:
4	chr7:100780042..100783761-chr7:100802307..100806519,5	MCF-7	breast:
5	chr7:100744230..100748590-chr7:100780366..100783718,4	K562	blood:
6	chr7:100780639..100782466-chr7:100782788..100785369,2	MCF-7	breast:
7	chr7:100720707..100722495-chr7:100781075..100783381,2	K562	blood:
8	chr7:100492341..100495034-chr7:100780506..100782862,2	K562	blood:
9	chr7:100781962..100783929-chr7:100804738..100806357,2	MCF-7	breast:
10	chr7:100779234..100783955-chr7:100785542..100789331,5	K562	blood:
11	chr7:100779414..100783459-chr7:100798726..100802024,6	MCF-7	breast:
12	chr7:100781684..100785304-chr7:100798644..100801104,3	MCF-7	breast:
13	chr7:100779282..100783217-chr7:100806580..100809194,3	MCF-7	breast:
14	chr7:100701345..100704259-chr7:100780586..100783131,2	MCF-7	breast:
15	chr7:100770587..100772277-chr7:100782304..100783957,2	MCF-7	breast:
16	chr7:100780601..100783229-chr7:100810687..100813674,2	K562	blood:
17	chr7:100780384..100783181-chr7:100803381..100807251,4	K562	blood:
18	chr7:100781461..100784552-chr7:100848282..100850837,3	K562	blood:
19	chr7:100736915..100741007-chr7:100780476..100783159,3	K562	blood:
20	chr7:100782455..100785842-chr7:100786021..100789331,3	K562	blood:
21	chr7:100780391..100784635-chr7:100796086..100800882,8	K562	blood:
22	chr7:100780501..100783397-chr7:100894230..100897012,3	K562	blood:
23	chr7:100767265..100771934-chr7:100778904..100783010,6	K562	blood:
24	chr7:100726373..100729644-chr7:100779186..100782906,3	MCF-7	breast:
25	chr7:100727419..100730152-chr7:100781603..100783210,3	MCF-7	breast:
26	chr7:100779832..100783181-chr7:100805552..100807331,3	K562	blood:
27	chr7:100782339..100784727-chr7:100935145..100937630,2	K562	blood:
28	chr7:100764109..100766499-chr7:100780947..100783449,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000087085	Chromatin interaction
ENSG00000176125	Chromatin interaction
ENSG00000222636	Chromatin interaction
ENSG00000214253	Chromatin interaction
ENSG00000106367	Chromatin interaction
ENSG00000264425	Chromatin interaction
ENSG00000169871	Chromatin interaction
ENSG00000106366	Chromatin interaction
ENSG00000128564	Chromatin interaction
ENSG00000260336	Chromatin interaction
ENSG00000087087	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2005742	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2227657	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2227660	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2227663	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2227694	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7459187	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs757717	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031942	chr7:100606734-100788660	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv1833777	chr7:100632790-100800131	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
5	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
6	nsv464649	chr7:100739682-100810983	Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv607972	chr7:100739682-100810983	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
9	nsv1018841	chr7:100760410-100868299	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
10	nsv534186	chr7:100773842-100898909	Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
11	nsv607973	chr7:100782460-100873835	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100770800-100783000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:100772000-100797400	Weak transcription	Right Atrium	heart
3	chr7:100779200-100783200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:100779400-100787200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:100781400-100783000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:100781400-100783600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:100781400-100785200	Enhancers	HMEC	breast
8	chr7:100781400-100787200	Weak transcription	Liver	Liver
9	chr7:100781400-100787200	Weak transcription	HepG2	liver
10	chr7:100781600-100783000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:100781600-100783400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:100781600-100784600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:100781600-100787200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:100781600-100787400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:100781800-100783000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:100781800-100784200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:100781800-100784400	Weak transcription	Stomach Mucosa	stomach
18	chr7:100781800-100787000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:100781800-100787000	Weak transcription	HSMM	muscle
20	chr7:100782000-100783000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:100782000-100783000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:100782000-100783000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:100782000-100783000	Weak transcription	Esophagus	oesophagus
24	chr7:100782000-100783000	Weak transcription	HUVEC	blood vessel
25	chr7:100782000-100783000	Weak transcription	NHLF	lung
26	chr7:100782000-100783400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:100782000-100783800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr7:100782000-100783800	Enhancers	Hela-S3	cervix
29	chr7:100782000-100784000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:100782000-100784000	Weak transcription	Placenta	Placenta
31	chr7:100782000-100784200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr7:100782000-100785200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:100782000-100785200	Enhancers	NHEK	skin
34	chr7:100782000-100787000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr7:100782000-100787000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr7:100782000-100787000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:100782000-100787000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr7:100782000-100787000	Weak transcription	NHDF-Ad	bronchial
39	chr7:100782000-100787200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr7:100782000-100787200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:100782200-100783000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:100782200-100783200	Weak transcription	Fetal Thymus	thymus
43	chr7:100782200-100783600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:100782200-100784400	Enhancers	K562	blood
45	chr7:100782200-100785000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:100782200-100786800	Weak transcription	Osteobl	bone
47	chr7:100782200-100787200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:100782200-100787200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr7:100782400-100783400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:100782400-100783600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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