Variant report

Variant	rs7459187
Chromosome Location	chr7:100785438-100785439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100740788..100742697-chr7:100783160..100785738,2	MCF-7	breast:
2	chr7:100779247..100781431-chr7:100783632..100785540,2	K562	blood:
3	chr7:100784280..100785999-chr7:100809746..100812572,2	MCF-7	breast:
4	chr7:100730465..100732139-chr7:100784272..100786414,2	MCF-7	breast:
5	chr7:100783069..100785864-chr7:100813339..100816901,3	MCF-7	breast:
6	chr7:100783441..100785685-chr7:100785909..100787671,4	MCF-7	breast:
7	chr7:100782455..100785842-chr7:100786021..100789331,3	K562	blood:
8	chr7:100783993..100788861-chr7:100804489..100807754,6	MCF-7	breast:

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2005742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2227657	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2227660	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2227663	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2227694	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2227704	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs757717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788294	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031942	chr7:100606734-100788660	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv1833777	chr7:100632790-100800131	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
5	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
6	nsv464649	chr7:100739682-100810983	Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv607972	chr7:100739682-100810983	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
9	nsv1018841	chr7:100760410-100868299	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
10	nsv534186	chr7:100773842-100898909	Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
11	nsv607973	chr7:100782460-100873835	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100772000-100797400	Weak transcription	Right Atrium	heart
2	chr7:100779400-100787200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:100781400-100787200	Weak transcription	Liver	Liver
4	chr7:100781400-100787200	Weak transcription	HepG2	liver
5	chr7:100781600-100787200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:100781600-100787400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:100781800-100787000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:100781800-100787000	Weak transcription	HSMM	muscle
9	chr7:100782000-100787000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:100782000-100787000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:100782000-100787000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr7:100782000-100787000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:100782000-100787000	Weak transcription	NHDF-Ad	bronchial
14	chr7:100782000-100787200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:100782000-100787200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:100782200-100786800	Weak transcription	Osteobl	bone
17	chr7:100782200-100787200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:100782200-100787200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:100782400-100787000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr7:100782400-100787200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:100782600-100787000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:100782600-100787000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:100782600-100787000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:100783200-100788600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:100783400-100786400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:100783400-100787000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:100783400-100787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:100783400-100787200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:100783800-100787000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:100783800-100787000	Weak transcription	Hela-S3	cervix
31	chr7:100784000-100788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:100784200-100787200	Weak transcription	A549	lung
33	chr7:100784400-100787000	Weak transcription	K562	blood
34	chr7:100784600-100787200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr7:100784600-100787600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr7:100784600-100788600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr7:100785000-100786400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr7:100785000-100787000	Weak transcription	Dnd41	blood
39	chr7:100785200-100786600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:100785200-100786800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links