Variant report

Variant	rs2229150
Chromosome Location	chr15:75015162-75015163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75013830..75015977-chr15:75016978..75019915,2	K562	blood:
2	chr15:75014713..75016571-chr15:75018498..75020290,2	MCF-7	breast:
3	chr15:75013723..75016080-chr15:75016180..75017992,2	MCF-7	breast:
4	chr15:75010612..75014177-chr15:75014520..75017331,4	MCF-7	breast:
5	chr15:74947916..74950488-chr15:75012401..75015386,2	MCF-7	breast:
6	chr15:75010497..75012932-chr15:75014660..75017447,2	K562	blood:
7	chr15:74988339..74990569-chr15:75013985..75017605,3	MCF-7	breast:
8	chr15:75008663..75010376-chr15:75014450..75017669,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1060480	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs12438386	1.00[CHD][hapmap]
rs13379550	1.00[CEU][hapmap]
rs17861107	1.00[CEU][hapmap]
rs2856833	1.00[CHD][hapmap]
rs28633484	1.00[CHD][hapmap]
rs4987133	1.00[CHB][hapmap]
rs7182476	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75009400-75015200	Weak transcription	HepG2	liver
2	chr15:75012400-75017600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:75012800-75016200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:75012800-75016600	Weak transcription	Liver	Liver
5	chr15:75013000-75017200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:75013000-75018000	Weak transcription	Left Ventricle	heart
7	chr15:75014200-75018200	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr15:75014800-75015600	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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