Variant report

Variant	rs2229196
Chromosome Location	chr11:4159567-4159568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv832053	chr11:4096527-4330263	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1053189	chr11:4123119-4359044	Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1048590	chr11:4133055-4225100	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv540911	chr11:4133055-4225100	Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1053482	chr11:4138062-4276133	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3393349	chr11:4157901-4160749	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3380413	chr11:4159374-4323846	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4117800-4160200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:4126600-4166600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:4138200-4160600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:4138800-4160400	Strong transcription	Placenta	Placenta
5	chr11:4144800-4160800	Weak transcription	Colonic Mucosa	Colon
6	chr11:4148600-4164800	Weak transcription	HSMMtube	muscle
7	chr11:4148800-4165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:4149200-4159600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:4149200-4160600	Weak transcription	Spleen	Spleen
10	chr11:4149200-4164600	Weak transcription	Gastric	stomach
11	chr11:4149400-4162200	Weak transcription	Psoas Muscle	Psoas
12	chr11:4149600-4169400	Weak transcription	Pancreas	Pancrea
13	chr11:4149800-4160600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:4153400-4165200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:4155600-4159600	Weak transcription	Aorta	Aorta
16	chr11:4156600-4159800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:4157000-4159600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:4157000-4162200	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:4157000-4166000	Weak transcription	NH-A	brain
20	chr11:4157400-4159600	Weak transcription	HMEC	breast
21	chr11:4157400-4159600	Weak transcription	Osteobl	bone
22	chr11:4157400-4161000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:4157400-4162200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:4157600-4159600	Weak transcription	HUVEC	blood vessel
25	chr11:4157800-4160600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:4157800-4160600	Weak transcription	Lung	lung
27	chr11:4158000-4160600	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:4158000-4160600	Weak transcription	Fetal Stomach	stomach
29	chr11:4158600-4160400	Weak transcription	Fetal Intestine Small	intestine
30	chr11:4159000-4163000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:4159000-4163400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:4159000-4164800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:4159200-4159800	ZNF genes & repeats	Fetal Brain Male	brain
34	chr11:4159200-4160200	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:4159200-4160200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:4159200-4161400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:4159200-4161600	ZNF genes & repeats	Dnd41	blood
38	chr11:4159200-4163800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr11:4159400-4159600	Strong transcription	Left Ventricle	heart
40	chr11:4159400-4159600	Strong transcription	Ovary	ovary
41	chr11:4159400-4159800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:4159400-4159800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr11:4159400-4159800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
44	chr11:4159400-4159800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:4159400-4159800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:4159400-4159800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:4159400-4159800	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:4159400-4159800	ZNF genes & repeats	Small Intestine	intestine
49	chr11:4159400-4159800	Strong transcription	Thymus	Thymus
50	chr11:4159400-4160000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links