Variant report

Variant	rs2234515
Chromosome Location	chr14:68129184-68129185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68106693..68108221-chr14:68127792..68129526,2	MCF-7	breast:
2	chr14:68128179..68130667-chr14:68160761..68163198,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072042	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10133858	1.00[EUR][1000 genomes]
rs10134513	1.00[EUR][1000 genomes]
rs11849600	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12100644	1.00[CEU][hapmap]
rs12892280	1.00[EUR][1000 genomes]
rs28417709	1.00[EUR][1000 genomes]
rs28521930	1.00[EUR][1000 genomes]
rs28705873	1.00[EUR][1000 genomes]
rs45462391	1.00[EUR][1000 genomes]
rs45584632	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4899213	1.00[EUR][1000 genomes]
rs4899220	1.00[CEU][hapmap]
rs7154825	1.00[EUR][1000 genomes]
rs7154877	1.00[EUR][1000 genomes]
rs7154887	1.00[EUR][1000 genomes]
rs7160492	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8015003	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68109000-68130000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:68109000-68133200	Weak transcription	Stomach Mucosa	stomach
3	chr14:68111000-68135200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:68112000-68129400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:68112000-68129800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr14:68112200-68129200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr14:68112400-68129400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:68112400-68129800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr14:68112400-68130000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:68112400-68130000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:68114800-68129800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:68115600-68130600	Strong transcription	Fetal Intestine Small	intestine
13	chr14:68115600-68135200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:68117000-68139400	Weak transcription	Psoas Muscle	Psoas
15	chr14:68118400-68129800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:68119400-68140400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:68120800-68135400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:68121400-68129200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:68121400-68132600	Weak transcription	Fetal Heart	heart
20	chr14:68123800-68132800	Weak transcription	NHLF	lung
21	chr14:68123800-68139400	Weak transcription	Fetal Brain Male	brain
22	chr14:68124000-68132400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:68124000-68132600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr14:68124000-68132600	Weak transcription	Brain Angular Gyrus	brain
25	chr14:68124000-68133200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr14:68124000-68133800	Weak transcription	Fetal Kidney	kidney
27	chr14:68124000-68136400	Weak transcription	Pancreas	Pancrea
28	chr14:68124000-68139600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:68124000-68140200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr14:68124000-68140200	Weak transcription	Right Ventricle	heart
31	chr14:68124200-68129600	Weak transcription	HMEC	breast
32	chr14:68124200-68132400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr14:68124200-68133400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr14:68124200-68133400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr14:68124200-68139400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:68124400-68132600	Weak transcription	HSMM	muscle
37	chr14:68124400-68132800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr14:68124400-68133400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr14:68124400-68133600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:68124400-68133800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr14:68124400-68135400	Weak transcription	Brain Germinal Matrix	brain
42	chr14:68124400-68136600	Weak transcription	Gastric	stomach
43	chr14:68124400-68138000	Weak transcription	Ovary	ovary
44	chr14:68124400-68139400	Weak transcription	Aorta	Aorta
45	chr14:68124400-68139400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr14:68124400-68139400	Weak transcription	Spleen	Spleen
47	chr14:68124400-68139600	Weak transcription	Colonic Mucosa	Colon
48	chr14:68124400-68140400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr14:68124400-68140800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:68124600-68132800	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links