Variant report

Variant	rs10133858
Chromosome Location	chr14:68066252-68066253
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68065533..68067898-chr14:68086654..68089518,2	K562	blood:
2	chr14:68052173..68055128-chr14:68065007..68067717,3	K562	blood:
3	chr14:68066197..68068186-chr17:66090683..66092203,2	MCF-7	breast:
4	chr14:68064718..68068935-chr14:68139775..68143920,7	MCF-7	breast:
5	chr14:68065568..68068491-chr14:68083250..68085597,2	K562	blood:
6	chr14:68065544..68068481-chr14:68141245..68142843,2	K562	blood:
7	chr14:68065024..68066751-chr14:68160977..68163130,3	K562	blood:
8	chr14:68052079..68053763-chr14:68065280..68066980,2	K562	blood:
9	chr14:68036651..68038481-chr14:68063645..68066498,2	MCF-7	breast:
10	chr14:68065024..68068542-chr14:68160973..68163130,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100568	Chromatin interaction
ENSG00000201529	Chromatin interaction
ENSG00000054690	Chromatin interaction
ENSG00000072042	Chromatin interaction
ENSG00000081181	Chromatin interaction
ENSG00000266117	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10134513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11849600	1.00[EUR][1000 genomes]
rs12892280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2234515	1.00[EUR][1000 genomes]
rs28417709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28521930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28629772	1.00[AMR][1000 genomes]
rs28705873	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45462391	1.00[EUR][1000 genomes]
rs45584632	1.00[EUR][1000 genomes]
rs4899213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7154825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7154877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7154887	1.00[EUR][1000 genomes]
rs7160492	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68057600-68066400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:68059200-68066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:68060200-68066400	Weak transcription	Spleen	Spleen
4	chr14:68061000-68066400	Weak transcription	Lung	lung
5	chr14:68064800-68067200	Active TSS	GM12878-XiMat	blood
6	chr14:68065200-68066400	Weak transcription	Small Intestine	intestine
7	chr14:68065400-68067400	Active TSS	K562	blood
8	chr14:68065600-68066400	Flanking Active TSS	Dnd41	blood
9	chr14:68065600-68067200	Active TSS	Fetal Intestine Large	intestine
10	chr14:68065600-68067400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:68065600-68067400	Active TSS	NHDF-Ad	bronchial
12	chr14:68065600-68067600	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr14:68065600-68067800	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr14:68065800-68066400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:68065800-68066400	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr14:68065800-68066400	Flanking Active TSS	Liver	Liver
17	chr14:68065800-68066400	Flanking Active TSS	Brain Anterior Caudate	brain
18	chr14:68065800-68066400	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr14:68065800-68066400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr14:68065800-68066400	Flanking Active TSS	Fetal Lung	lung
21	chr14:68065800-68066600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:68065800-68066600	Flanking Active TSS	Fetal Brain Male	brain
23	chr14:68065800-68066600	Flanking Active TSS	HSMMtube	muscle
24	chr14:68065800-68066600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr14:68065800-68066800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr14:68065800-68066800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
27	chr14:68065800-68066800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:68065800-68066800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:68065800-68067200	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr14:68065800-68067200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:68065800-68067200	Active TSS	Ovary	ovary
32	chr14:68065800-68067400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:68065800-68067400	Active TSS	Brain Germinal Matrix	brain
34	chr14:68065800-68067400	Active TSS	Brain Substantia Nigra	brain
35	chr14:68065800-68067600	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr14:68065800-68067600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:68065800-68067600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:68065800-68067600	Active TSS	Colon Smooth Muscle	Colon
39	chr14:68065800-68067800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:68066000-68066400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
41	chr14:68066000-68066400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr14:68066000-68066400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr14:68066000-68066400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
44	chr14:68066000-68066400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr14:68066000-68066400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr14:68066000-68066400	Flanking Active TSS	Brain Angular Gyrus	brain
47	chr14:68066000-68066400	Flanking Active TSS	Fetal Kidney	kidney
48	chr14:68066000-68066400	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr14:68066000-68066400	Flanking Active TSS	Osteobl	bone
50	chr14:68066000-68066600	Flanking Active TSS	Primary B cells from peripheral blood	blood

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