Variant report

Variant	rs28629772
Chromosome Location	chr14:68069726-68069727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10133858	1.00[AMR][1000 genomes]
rs10134513	1.00[AMR][1000 genomes]
rs12892280	1.00[AMR][1000 genomes]
rs28417709	1.00[AMR][1000 genomes]
rs28521930	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28705873	1.00[AMR][1000 genomes]
rs4899213	1.00[AMR][1000 genomes]
rs7154825	1.00[AMR][1000 genomes]
rs7154877	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68067400-68069800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68067400-68069800	Weak transcription	Ovary	ovary
3	chr14:68067400-68070200	Weak transcription	Pancreas	Pancrea
4	chr14:68067400-68070400	Enhancers	Primary B cells from cord blood	blood
5	chr14:68067400-68070800	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:68067400-68071200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:68067400-68076600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:68067600-68069800	Weak transcription	HepG2	liver
9	chr14:68067800-68069800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:68069200-68069800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:68069200-68070000	Active TSS	GM12878-XiMat	blood
12	chr14:68069600-68070000	Flanking Active TSS	Fetal Kidney	kidney
13	chr14:68069600-68071400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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