Variant report

Variant	rs2235485
Chromosome Location	chr6:133703325-133703326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17062411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17062478	1.00[ASW][hapmap];0.81[JPT][hapmap]
rs1855989	0.80[JPT][hapmap]
rs2327322	0.81[JPT][hapmap]
rs3777811	1.00[ASW][hapmap];0.81[JPT][hapmap]
rs3777819	0.81[JPT][hapmap]
rs3777827	0.81[JPT][hapmap]
rs3822930	0.80[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2235485	TAAR9	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133699400-133705600	Weak transcription	Hela-S3	cervix
3	chr6:133701200-133703800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:133701800-133703800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:133701800-133710000	Weak transcription	Psoas Muscle	Psoas
6	chr6:133703200-133703800	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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