Variant report

Variant	rs3777811
Chromosome Location	chr6:133715210-133715211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17062411	0.81[JPT][hapmap]
rs17062478	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1855989	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2235485	1.00[ASW][hapmap];0.81[JPT][hapmap]
rs2327322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34925767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777827	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3822930	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66938915	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133709800-133719800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:133710600-133716400	Weak transcription	Psoas Muscle	Psoas
4	chr6:133711200-133717400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:133712200-133716200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:133712400-133716000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:133713000-133715800	Weak transcription	Fetal Heart	heart
8	chr6:133713200-133716000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:133713600-133717800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:133713800-133716600	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:133713800-133719200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:133714200-133717000	Weak transcription	HSMMtube	muscle
13	chr6:133714400-133717000	Weak transcription	HSMM	muscle
14	chr6:133714800-133715400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:133714800-133715800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:133715000-133719400	Weak transcription	Hela-S3	cervix
17	chr6:133715200-133716000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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