Variant report

Variant	rs2235709
Chromosome Location	chrX:138679154-138679155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10521799	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10521800	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10521801	0.82[CHB][hapmap]
rs17002175	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17342379	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2076502	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2235708	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4824955	0.89[JPT][hapmap]
rs5907047	0.86[JPT][hapmap]
rs5907612	1.00[JPT][hapmap]
rs6634087	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532935	chrX:138281469-138764448	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv482267	chrX:138669319-138817041	Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138673600-138720600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chrX:138678200-138679400	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links