Variant report

Variant	rs2237557
Chromosome Location	chr7:86392611-86392612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11981009	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16888210	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17160978	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17697445	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2214860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2237552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237559	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2299222	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2299225	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2888551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58683682	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86379600-86400200	Weak transcription	Fetal Brain Female	brain
2	chr7:86389000-86392800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:86389200-86394000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:86389200-86394000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:86390000-86393000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:86390000-86393400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:86390400-86398000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:86390600-86397600	Weak transcription	Brain Angular Gyrus	brain
9	chr7:86390600-86398000	Weak transcription	Brain Anterior Caudate	brain
10	chr7:86390600-86398200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:86390800-86394600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:86390800-86397800	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:86391200-86393000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:86392200-86392800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:86392400-86393400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:86392600-86393400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:86392600-86393400	Enhancers	Brain Substantia Nigra	brain
18	chr7:86392600-86394800	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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