Variant report

Variant	rs58683682
Chromosome Location	chr7:86413001-86413002
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11981009	0.83[EUR][1000 genomes]
rs16888210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17160978	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17697445	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17697543	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17697609	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17765140	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2214860	0.89[EUR][1000 genomes]
rs2237551	0.89[EUR][1000 genomes]
rs2237552	0.89[EUR][1000 genomes]
rs2237557	0.89[EUR][1000 genomes]
rs2237559	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299221	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299222	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2299223	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299224	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299225	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2888551	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86399000-86415400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:86399800-86415400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:86406400-86416200	Weak transcription	Fetal Heart	heart
4	chr7:86406800-86413200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:86408000-86415600	Weak transcription	Fetal Brain Female	brain
6	chr7:86408400-86413600	Weak transcription	Brain Substantia Nigra	brain
7	chr7:86410200-86413200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:86412600-86414400	Enhancers	Brain Anterior Caudate	brain
9	chr7:86412600-86415000	Enhancers	GM12878-XiMat	blood
10	chr7:86413000-86414000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:86413000-86414400	Enhancers	Brain Angular Gyrus	brain
12	chr7:86413000-86414400	Enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links