Variant report

Variant	rs2237566
Chromosome Location	chr7:86456100-86456101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10085604	0.84[ASN][1000 genomes]
rs1468412	0.84[ASN][1000 genomes]
rs17126	0.92[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs2237562	0.84[ASN][1000 genomes]
rs2237565	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282966	0.81[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs6465088	0.92[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs6944519	0.97[ASN][1000 genomes]
rs6944719	1.00[ASN][1000 genomes]
rs6977175	0.84[ASN][1000 genomes]
rs7804907	0.84[ASN][1000 genomes]
rs7806785	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86442200-86468400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:86443400-86480600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:86453400-86468400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:86454600-86456400	Enhancers	Brain Substantia Nigra	brain
5	chr7:86454800-86456400	Enhancers	Brain Anterior Caudate	brain
6	chr7:86454800-86456400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr7:86455000-86456200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:86455200-86456600	Enhancers	Brain Hippocampus Middle	brain
9	chr7:86455600-86456200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:86455600-86456400	Enhancers	Stomach Mucosa	stomach
11	chr7:86455800-86456600	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:86456000-86459600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links