Variant report

Variant	rs2282966
Chromosome Location	chr7:86475667-86475668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86470932..86473757-chr7:86473774..86477505,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10270673	0.83[EUR][1000 genomes]
rs12704299	0.82[CEU][hapmap]
rs13230321	0.86[JPT][hapmap]
rs17126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237565	0.86[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs2237566	0.81[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs6465088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6944519	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6944719	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6965383	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs6976877	0.86[CEU][hapmap]
rs7781178	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs7781414	0.83[CEU][hapmap]
rs7788695	0.83[EUR][1000 genomes]
rs7789655	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs7807203	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86443400-86480600	Weak transcription	Brain Angular Gyrus	brain
2	chr7:86460800-86492800	Weak transcription	Brain Germinal Matrix	brain
3	chr7:86461000-86475800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:86461000-86495400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:86463000-86476600	Weak transcription	Pancreas	Pancrea
6	chr7:86465600-86496800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:86466000-86486600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:86467000-86497400	Weak transcription	Fetal Brain Female	brain
9	chr7:86467400-86479600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:86468000-86479600	Weak transcription	Brain Substantia Nigra	brain
11	chr7:86469000-86480800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:86469200-86479600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:86469200-86496800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:86474800-86476000	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr7:86474800-86476800	Enhancers	Stomach Mucosa	stomach
16	chr7:86474800-86478200	Enhancers	Fetal Intestine Small	intestine
17	chr7:86475000-86477200	Enhancers	HepG2	liver
18	chr7:86475200-86477400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr7:86475200-86478200	Enhancers	Fetal Intestine Large	intestine
20	chr7:86475200-86478200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr7:86475600-86475800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:86475600-86475800	Enhancers	Liver	Liver
23	chr7:86475600-86476000	Enhancers	Rectal Mucosa Donor 29	rectum

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