Variant report

Variant	rs2237656
Chromosome Location	chr7:106762739-106762740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106758338..106764919-chr7:106770335..106778369,9	K562	blood:
2	chr7:106755457..106758160-chr7:106760094..106763600,5	K562	blood:
3	chr7:106761889..106764464-chr7:106771416..106774166,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243193	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10281856	0.83[JPT][hapmap]
rs10953528	0.81[ASN][1000 genomes]
rs12667954	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12669339	0.81[ASN][1000 genomes]
rs12674011	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12705402	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12705403	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1860803	0.83[JPT][hapmap]
rs2237652	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237657	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2283037	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2302453	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3735613	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801969	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs62483580	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62483581	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6466157	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6466158	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6952920	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6969719	0.82[JPT][hapmap]
rs717099	0.83[JPT][hapmap]
rs741008	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7790497	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7809330	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs917760	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9648946	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3392591	chr7:106762353-106762759	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106756600-106771200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:106759200-106762800	Weak transcription	Ovary	ovary
3	chr7:106759400-106762800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:106759800-106762800	Weak transcription	Fetal Lung	lung
5	chr7:106759800-106763400	Weak transcription	NHLF	lung
6	chr7:106759800-106771600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:106759800-106774000	Weak transcription	Left Ventricle	heart
8	chr7:106760000-106763200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:106760200-106763400	Weak transcription	Fetal Stomach	stomach
10	chr7:106760200-106771200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:106760200-106782000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:106760400-106762800	Weak transcription	K562	blood
13	chr7:106760400-106808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:106760600-106765400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:106760600-106771400	Weak transcription	Fetal Kidney	kidney
16	chr7:106762000-106763800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:106762200-106763400	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr7:106762200-106765800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:106762400-106763000	Enhancers	Stomach Smooth Muscle	stomach
20	chr7:106762400-106763400	Enhancers	Liver	Liver
21	chr7:106762600-106763000	Flanking Active TSS	A549	lung
22	chr7:106762600-106763200	Enhancers	Osteobl	bone
23	chr7:106762600-106763400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:106762600-106763400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr7:106762600-106763600	Enhancers	Adipose Nuclei	Adipose
26	chr7:106762600-106763600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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