Variant report

Variant	rs10281856
Chromosome Location	chr7:106761779-106761780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106758338..106764919-chr7:106770335..106778369,9	K562	blood:
2	chr7:106755757..106757924-chr7:106759661..106762165,2	K562	blood:
3	chr7:106641138..106644033-chr7:106760263..106762025,2	MCF-7	breast:
4	chr7:106755457..106758160-chr7:106760094..106763600,5	K562	blood:

Variant related genes	Relation type
ENSG00000243193	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10248105	0.82[YRI][hapmap]
rs10261881	0.95[YRI][hapmap]
rs10272371	0.84[YRI][hapmap]
rs11760261	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12667954	0.82[JPT][hapmap]
rs12705402	0.83[JPT][hapmap]
rs12705403	0.81[CHD][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap]
rs12705404	0.86[GIH][hapmap]
rs13311274	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1860803	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237652	0.83[JPT][hapmap]
rs2237654	0.82[JPT][hapmap]
rs2237656	0.83[JPT][hapmap]
rs2250121	0.84[YRI][hapmap]
rs2302453	0.83[CHD][hapmap];0.83[JPT][hapmap];0.86[MEX][hapmap]
rs3735613	0.81[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap]
rs3801968	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3801969	0.83[JPT][hapmap]
rs6466156	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6466159	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6955387	0.96[CEU][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6960708	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs717099	0.94[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.95[YRI][hapmap];0.91[ASN][1000 genomes]
rs741008	0.83[JPT][hapmap]
rs7778076	0.87[YRI][hapmap]
rs7786692	0.95[YRI][hapmap]
rs7800621	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7809330	0.83[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap]
rs917760	0.83[JPT][hapmap]
rs9648946	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10281856	ATXN7L1	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106756600-106771200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:106759200-106762000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:106759200-106762800	Weak transcription	Ovary	ovary
4	chr7:106759400-106762000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:106759400-106762400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:106759400-106762600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:106759400-106762800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:106759800-106762800	Weak transcription	Fetal Lung	lung
9	chr7:106759800-106763400	Weak transcription	NHLF	lung
10	chr7:106759800-106771600	Weak transcription	Brain Anterior Caudate	brain
11	chr7:106759800-106774000	Weak transcription	Left Ventricle	heart
12	chr7:106760000-106763200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:106760200-106762600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:106760200-106763400	Weak transcription	Fetal Stomach	stomach
15	chr7:106760200-106771200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:106760200-106782000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:106760400-106762600	Weak transcription	Adipose Nuclei	Adipose
18	chr7:106760400-106762800	Weak transcription	K562	blood
19	chr7:106760400-106808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:106760600-106762200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:106760600-106765400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:106760600-106771400	Weak transcription	Fetal Kidney	kidney
23	chr7:106761600-106761800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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