Variant report

Variant	rs11760261
Chromosome Location	chr7:106779480-106779481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10281856	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11772066	1.00[YRI][hapmap]
rs12705403	0.83[JPT][hapmap]
rs13311274	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17341680	1.00[YRI][hapmap]
rs1860803	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302453	0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs3735613	0.83[JPT][hapmap]
rs3752645	1.00[YRI][hapmap]
rs3801968	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3801969	0.83[JPT][hapmap]
rs6466156	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6466159	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6955387	0.81[CEU][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs717099	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7800621	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7809330	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106760200-106782000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:106760400-106808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:106763000-106807800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:106767400-106797600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:106767800-106782400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:106770000-106779600	Weak transcription	Adipose Nuclei	Adipose
7	chr7:106773200-106786800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:106777800-106781400	Weak transcription	K562	blood
9	chr7:106778400-106780400	Enhancers	Fetal Brain Male	brain
10	chr7:106778400-106807800	Weak transcription	Brain Germinal Matrix	brain
11	chr7:106778800-106782800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:106779000-106780200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:106779000-106780200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:106779200-106780000	Enhancers	Fetal Stomach	stomach
15	chr7:106779400-106780000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:106779400-106780000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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