Variant report

Variant	rs6955387
Chromosome Location	chr7:106748039-106748040
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10281856	0.96[CEU][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11760261	0.81[CEU][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13311274	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1860803	0.92[CEU][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801968	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6466156	0.99[ASN][1000 genomes]
rs6466159	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs717099	0.85[CEU][hapmap];0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7800621	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv608072	chr7:106718347-106753248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106744200-106755800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:106746400-106749200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:106746400-106759000	Weak transcription	Left Ventricle	heart
4	chr7:106746600-106753400	Weak transcription	Fetal Heart	heart
5	chr7:106746600-106756200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:106746600-106760400	Weak transcription	Right Atrium	heart
7	chr7:106747200-106757800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:106747200-106758800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:106747200-106758800	Weak transcription	Fetal Brain Female	brain
10	chr7:106747400-106748400	Weak transcription	K562	blood
11	chr7:106747400-106749200	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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