Variant report

Variant	rs2237977
Chromosome Location	chr11:17476388-17476389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17475034..17476631-chr11:17480945..17483490,2	K562	blood:
2	chr11:17476148..17478074-chr11:17479961..17481656,2	MCF-7	breast:
3	chr11:17474460..17476644-chr11:17478483..17480619,2	K562	blood:
4	chr11:17471704..17474576-chr11:17475310..17477119,2	MCF-7	breast:
5	chr11:17417635..17419450-chr11:17475960..17478290,2	MCF-7	breast:
6	chr11:17476190..17478862-chr11:17505917..17508222,2	K562	blood:
7	chr11:17475103..17476631-chr11:17480945..17482872,2	K562	blood:

Variant related genes	Relation type
ENSG00000006071	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10400389	0.89[EUR][1000 genomes]
rs10766401	0.90[EUR][1000 genomes]
rs10766402	0.93[EUR][1000 genomes]
rs10766403	0.92[EUR][1000 genomes]
rs10832788	0.91[EUR][1000 genomes]
rs10832789	0.91[EUR][1000 genomes]
rs10832791	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11024290	0.91[EUR][1000 genomes]
rs11024295	0.93[EUR][1000 genomes]
rs11024296	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11024297	0.83[AMR][1000 genomes]
rs11826760	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12285976	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12417170	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12786125	0.91[EUR][1000 genomes]
rs12803384	0.92[EUR][1000 genomes]
rs17775256	0.86[AMR][1000 genomes]
rs2040653	0.81[AMR][1000 genomes]
rs2057661	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073585	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073586	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073587	0.91[EUR][1000 genomes]
rs2237966	0.83[AMR][1000 genomes]
rs2237968	0.86[AMR][1000 genomes]
rs2237969	0.86[AMR][1000 genomes]
rs2237970	0.84[AMR][1000 genomes]
rs2237971	0.86[AMR][1000 genomes]
rs2237972	0.86[EUR][1000 genomes]
rs2237973	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2237974	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2237975	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2237976	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237978	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2237980	0.91[EUR][1000 genomes]
rs2237982	0.91[EUR][1000 genomes]
rs2237983	0.91[EUR][1000 genomes]
rs2283256	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2283258	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2283259	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2283261	0.91[EUR][1000 genomes]
rs2301703	0.94[EUR][1000 genomes]
rs3781950	0.90[EUR][1000 genomes]
rs3815066	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3819517	0.93[EUR][1000 genomes]
rs3819518	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3819519	0.93[EUR][1000 genomes]
rs3819520	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3819521	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3819523	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3819524	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4148601	0.83[AMR][1000 genomes]
rs4148602	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4148603	0.92[EUR][1000 genomes]
rs4148604	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4148605	0.86[AMR][1000 genomes]
rs4148606	0.87[EUR][1000 genomes]
rs4148607	0.86[AMR][1000 genomes]
rs4148608	0.86[AMR][1000 genomes]
rs4148609	0.80[EUR][1000 genomes]
rs4148610	0.80[EUR][1000 genomes]
rs4459286	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6486370	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7105391	0.81[EUR][1000 genomes]
rs7105832	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7106250	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7119716	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7120682	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs757109	0.91[EUR][1000 genomes]
rs7934185	0.93[EUR][1000 genomes]
rs886291	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897019	chr11:17475443-17499547	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17461200-17497400	Weak transcription	Gastric	stomach
2	chr11:17465800-17481600	Weak transcription	Fetal Brain Female	brain
3	chr11:17465800-17496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:17467400-17478600	Weak transcription	Dnd41	blood
5	chr11:17470200-17482000	Weak transcription	Brain Germinal Matrix	brain
6	chr11:17472400-17489600	Weak transcription	Brain Substantia Nigra	brain
7	chr11:17473600-17478200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:17473800-17478800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:17474000-17482200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:17474000-17485000	Weak transcription	Lung	lung
11	chr11:17474400-17479000	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:17474400-17481800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:17474600-17476400	Strong transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:17474600-17481800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:17474800-17481800	Weak transcription	Brain Anterior Caudate	brain
16	chr11:17474800-17481800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:17476200-17479000	Weak transcription	Fetal Muscle Trunk	muscle

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