Variant report

Variant	rs12786125
Chromosome Location	chr11:17472002-17472003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17471704..17474576-chr11:17475310..17477119,2	MCF-7	breast:
2	chr11:17467958..17471223-chr11:17471420..17474458,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10400389	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10766399	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10766400	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10766401	0.89[EUR][1000 genomes]
rs10766402	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10766403	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10832788	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832789	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11024290	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11024295	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11821723	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12417170	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12794627	0.87[ASN][1000 genomes]
rs12803384	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17775256	0.86[ASN][1000 genomes]
rs2040653	0.86[ASN][1000 genomes]
rs2057661	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2073585	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2073586	0.92[EUR][1000 genomes]
rs2073587	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2074319	0.89[AMR][1000 genomes]
rs2237972	0.80[EUR][1000 genomes]
rs2237973	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2237975	0.82[AMR][1000 genomes]
rs2237976	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2237977	0.91[EUR][1000 genomes]
rs2237978	0.86[ASN][1000 genomes]
rs2237979	0.86[ASN][1000 genomes]
rs2237980	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2237982	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2237983	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2283259	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2283261	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2301703	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3781950	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3815066	0.85[AMR][1000 genomes]
rs3819517	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3819519	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3819522	0.82[AMR][1000 genomes]
rs4148603	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4148606	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4148609	0.85[AMR][1000 genomes]
rs4148610	0.91[AMR][1000 genomes]
rs4459286	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6486370	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7105391	0.88[AMR][1000 genomes]
rs7117162	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs71457878	0.83[AMR][1000 genomes]
rs757109	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7934185	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7943461	0.91[AMR][1000 genomes]
rs7947326	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs886291	0.88[AMR][1000 genomes]
rs886292	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12786125	ABCC8	cis	Muscle Skeletal	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17460800-17474000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:17461200-17497400	Weak transcription	Gastric	stomach
3	chr11:17464800-17472800	Weak transcription	Brain Anterior Caudate	brain
4	chr11:17465800-17481600	Weak transcription	Fetal Brain Female	brain
5	chr11:17465800-17496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:17466200-17473600	Weak transcription	Brain Angular Gyrus	brain
7	chr11:17467400-17478600	Weak transcription	Dnd41	blood
8	chr11:17470000-17473000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:17470200-17482000	Weak transcription	Brain Germinal Matrix	brain
10	chr11:17470400-17473000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:17471400-17472800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links