Variant report

Variant	rs886292
Chromosome Location	chr11:17466045-17466046
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr11:17465916-17466440	HEK293-T-REx	kidney:	n/a	chr11:17466098-17466119

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17411217..17412789-chr11:17465893..17468748,2	MCF-7	breast:
2	chr11:17425857..17428826-chr11:17463749..17466704,2	K562	blood:

Variant related genes	Relation type
ABCC8	TF binding region
ENSG00000006071	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10766399	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832788	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832789	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832791	0.89[EUR][1000 genomes]
rs11024290	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024295	0.81[CEU][hapmap]
rs11024296	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs11024297	0.86[EUR][1000 genomes]
rs11024299	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs11821723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826760	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs12285976	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs12417170	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12786125	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12794627	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17775256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2040653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057661	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2073585	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2073587	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2074319	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2237966	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs2237968	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs2237969	0.86[EUR][1000 genomes]
rs2237970	0.86[EUR][1000 genomes]
rs2237971	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs2237974	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs2237975	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2237976	0.81[CEU][hapmap];0.89[AMR][1000 genomes]
rs2237978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237980	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237981	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2237982	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237983	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2283254	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs2283256	0.89[EUR][1000 genomes]
rs2283258	0.83[CEU][hapmap]
rs2283259	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2283261	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2301703	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs3781950	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3815066	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3819517	0.81[CEU][hapmap]
rs3819518	0.90[EUR][1000 genomes]
rs3819520	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs3819521	0.90[EUR][1000 genomes]
rs3819522	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3819523	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs3819524	0.90[EUR][1000 genomes]
rs4148601	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs4148602	0.88[EUR][1000 genomes]
rs4148604	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs4148605	0.84[EUR][1000 genomes]
rs4148607	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4148608	0.85[EUR][1000 genomes]
rs4148609	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4148610	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4459286	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6486370	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7105391	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7105832	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7106250	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7117162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7119716	0.89[EUR][1000 genomes]
rs7120682	0.89[EUR][1000 genomes]
rs71457878	0.85[EUR][1000 genomes]
rs757109	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7932043	0.82[ASN][1000 genomes]
rs7934185	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7943461	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7947326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7950189	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs886291	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17456000-17469200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:17457000-17467200	Weak transcription	Fetal Brain Male	brain
3	chr11:17460800-17474000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:17461200-17497400	Weak transcription	Gastric	stomach
5	chr11:17463000-17466200	Weak transcription	Dnd41	blood
6	chr11:17464800-17472800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:17465800-17466200	Enhancers	Brain Angular Gyrus	brain
8	chr11:17465800-17469600	Weak transcription	Brain Germinal Matrix	brain
9	chr11:17465800-17481600	Weak transcription	Fetal Brain Female	brain
10	chr11:17465800-17496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:17466000-17470000	Strong transcription	Pancreatic Islets	Pancreatic Islet

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