Variant report

Variant	rs2238202
Chromosome Location	chr14:72759177-72759178
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72398725..72399242-chr14:72758933..72759467,2	MCF-7	breast:
2	chr14:72398600..72399168-chr14:72758847..72759362,2	MCF-7	breast:
3	chr14:72570534..72571227-chr14:72759065..72759718,2	MCF-7	breast:
4	chr14:72570215..72571451-chr14:72758982..72759729,6	MCF-7	breast:
5	chr14:72490629..72491408-chr14:72758856..72759783,5	MCF-7	breast:
6	chr14:72758845..72761499-chr14:72887079..72888301,15	MCF-7	breast:
7	chr14:72398262..72400525-chr14:72758927..72761647,3	MCF-7	breast:
8	chr14:72489255..72491408-chr14:72757396..72759777,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1476701	0.81[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2079499	0.88[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2239250	0.86[JPT][hapmap]
rs2239251	0.86[JPT][hapmap]
rs2239259	0.84[CHD][hapmap]
rs4353437	0.81[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574062	0.81[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6574064	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7143932	0.81[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7161662	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8010242	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs847342	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72756600-72759200	Enhancers	Fetal Brain Male	brain
2	chr14:72756800-72759600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:72757800-72759400	Active TSS	Stomach Smooth Muscle	stomach
4	chr14:72758000-72759600	Enhancers	Fetal Stomach	stomach
5	chr14:72758600-72759200	Enhancers	Adipose Nuclei	Adipose
6	chr14:72758600-72759600	Enhancers	Ovary	ovary
7	chr14:72758800-72759200	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr14:72758800-72759200	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr14:72758800-72759200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:72758800-72759200	Enhancers	Fetal Heart	heart
11	chr14:72758800-72759200	Enhancers	Fetal Muscle Leg	muscle
12	chr14:72759000-72759200	Active TSS	Left Ventricle	heart
13	chr14:72759000-72759200	Active TSS	Right Atrium	heart
14	chr14:72759000-72759200	Enhancers	Right Ventricle	heart
15	chr14:72759000-72759200	Bivalent Enhancer	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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