Variant report

Variant	rs2239251
Chromosome Location	chr14:72785464-72785465
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72785270..72787957-chr14:72798250..72801124,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1476701	0.91[YRI][hapmap]
rs2238202	0.86[JPT][hapmap]
rs2239227	0.86[AMR][1000 genomes]
rs2239250	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4353437	0.91[YRI][hapmap]
rs55916717	0.84[AMR][1000 genomes]
rs56326625	0.86[AMR][1000 genomes]
rs57360450	0.86[AMR][1000 genomes]
rs58216158	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574062	0.91[YRI][hapmap]
rs6574066	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7147236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7158564	0.82[AMR][1000 genomes]
rs72721902	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724035	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72724044	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72724054	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72724092	0.86[AMR][1000 genomes]
rs72724098	0.86[AMR][1000 genomes]
rs8007684	0.85[CHB][hapmap]
rs8008045	0.85[CHB][hapmap]
rs8010242	0.86[JPT][hapmap];0.91[YRI][hapmap]
rs8018927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8020136	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8022845	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs847342	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72781200-72789400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72785200-72785600	Active TSS	Left Ventricle	heart
3	chr14:72785200-72785600	Active TSS	A549	lung
4	chr14:72785200-72785800	Active TSS	Adipose Nuclei	Adipose
5	chr14:72785200-72786000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:72785400-72785800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr14:72785400-72785800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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