Variant report

Variant	rs6574066
Chromosome Location	chr14:72790704-72790705
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1476701	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs2079499	0.85[JPT][hapmap]
rs2239227	0.88[AMR][1000 genomes]
rs2239250	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2239251	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4353437	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs55916717	0.86[AMR][1000 genomes]
rs56326625	0.88[AMR][1000 genomes]
rs57360450	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs58216158	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6574062	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs7143932	0.86[JPT][hapmap]
rs7147236	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158564	0.84[AMR][1000 genomes]
rs72721902	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72724035	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72724044	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72724054	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72724074	0.81[AMR][1000 genomes]
rs72724092	0.88[AMR][1000 genomes]
rs72724098	0.88[AMR][1000 genomes]
rs8007684	0.85[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes]
rs8008045	0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs8010242	1.00[YRI][hapmap]
rs8018927	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8020136	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8022845	0.87[CEU][hapmap];0.85[CHB][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72786000-72792400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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