Variant report

Variant	rs2240182
Chromosome Location	chr22:31360592-31360593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:31358926..31361303-chr22:31361613..31363630,2	K562	blood:
2	chr22:31350661..31352197-chr22:31360542..31362275,2	K562	blood:
3	chr22:31341646..31347156-chr22:31356738..31361617,7	K562	blood:
4	chr22:31354060..31357711-chr22:31360112..31362776,4	K562	blood:
5	chr22:31346728..31348525-chr22:31359939..31362603,2	MCF-7	breast:
6	chr22:31348730..31351092-chr22:31359078..31361290,2	MCF-7	breast:
7	chr22:31354949..31372607-chr22:31475365..31485377,53	MCF-7	breast:
8	chr22:31358868..31372302-chr22:31474097..31485545,64	MCF-7	breast:
9	chr22:31360045..31368675-chr22:31475412..31482694,29	K562	blood:
10	chr22:31355920..31358724-chr22:31359423..31361158,2	MCF-7	breast:
11	chr22:31360377..31363179-chr22:31451258..31453241,3	K562	blood:
12	chr22:31357301..31361303-chr22:31361613..31367076,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000253352	Chromatin interaction
ENSG00000273387	Chromatin interaction
ENSG00000183963	Chromatin interaction
ENSG00000133422	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1003480	0.94[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1005252	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10854601	0.93[YRI][hapmap]
rs2074578	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2240175	0.93[YRI][hapmap]
rs2240177	0.83[ASW][hapmap];1.00[YRI][hapmap]
rs2240179	1.00[YRI][hapmap]
rs2240180	0.93[YRI][hapmap]
rs2240183	1.00[YRI][hapmap]
rs2285918	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3747151	0.83[ASW][hapmap];1.00[YRI][hapmap]
rs3788426	0.83[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs3804085	0.83[ASW][hapmap];0.96[YRI][hapmap]
rs4820916	0.83[ASW][hapmap];1.00[YRI][hapmap]
rs4820925	0.80[AFR][1000 genomes]
rs5749186	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5749194	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5749195	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5753369	0.83[ASW][hapmap];0.88[CHB][hapmap];0.82[LWK][hapmap];0.93[YRI][hapmap]
rs5753388	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5753392	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5753394	0.93[YRI][hapmap]
rs5753398	0.96[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5753407	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs5753408	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs5753410	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs5997830	1.00[YRI][hapmap]
rs5997838	0.83[ASW][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs5997846	0.83[ASW][hapmap];0.92[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap]
rs722683	0.83[AFR][1000 genomes]
rs722684	0.83[AFR][1000 genomes]
rs7284767	0.83[ASW][hapmap];1.00[YRI][hapmap]
rs7289831	0.80[AFR][1000 genomes]
rs7291077	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7291199	0.82[AFR][1000 genomes]
rs7291361	1.00[YRI][hapmap]
rs737924	0.83[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs739896	0.90[YRI][hapmap]
rs8135974	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9609183	0.96[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2240182	FBXO7	cis	parietal	SCAN

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31317600-31364000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:31342400-31361000	Weak transcription	Small Intestine	intestine
3	chr22:31344600-31363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr22:31344800-31361600	Weak transcription	Fetal Heart	heart
5	chr22:31345400-31364000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr22:31345600-31364200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr22:31346000-31364400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr22:31346200-31364200	Weak transcription	Brain Substantia Nigra	brain
9	chr22:31347200-31363000	Weak transcription	Colon Smooth Muscle	Colon
10	chr22:31347200-31364400	Weak transcription	Esophagus	oesophagus
11	chr22:31347400-31362400	Weak transcription	Gastric	stomach
12	chr22:31347400-31362400	Weak transcription	Lung	lung
13	chr22:31347400-31363000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr22:31347400-31363800	Weak transcription	NHLF	lung
15	chr22:31347600-31363000	Weak transcription	Spleen	Spleen
16	chr22:31347600-31363400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr22:31347600-31363400	Weak transcription	HMEC	breast
18	chr22:31347600-31364000	Weak transcription	Fetal Kidney	kidney
19	chr22:31348600-31362800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr22:31348800-31363000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr22:31348800-31363800	Weak transcription	Brain Angular Gyrus	brain
22	chr22:31348800-31364000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr22:31349000-31363000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr22:31349000-31364400	Weak transcription	Aorta	Aorta
25	chr22:31349200-31363600	Weak transcription	Brain Hippocampus Middle	brain
26	chr22:31349200-31364200	Weak transcription	Thymus	Thymus
27	chr22:31349400-31364400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr22:31349800-31363800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr22:31349800-31363800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr22:31349800-31363800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr22:31349800-31363800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr22:31349800-31364200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr22:31350400-31364200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr22:31350600-31363000	Weak transcription	Psoas Muscle	Psoas
35	chr22:31350800-31363000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr22:31350800-31363800	Weak transcription	Brain Anterior Caudate	brain
37	chr22:31351000-31363600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr22:31351000-31364400	Weak transcription	Ovary	ovary
39	chr22:31351400-31362200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr22:31351800-31363800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr22:31351800-31364000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr22:31352400-31362200	Weak transcription	Liver	Liver
43	chr22:31352400-31363600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr22:31352600-31362400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr22:31352600-31362400	Weak transcription	Left Ventricle	heart
46	chr22:31352600-31363400	Weak transcription	NHEK	skin
47	chr22:31352600-31364200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr22:31352800-31360600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr22:31352800-31361400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr22:31352800-31361600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links