Variant report

Variant	rs2285918
Chromosome Location	chr22:31355354-31355355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31323613..31326465-chr22:31353676..31355582,2	K562	blood:
2	chr22:31354949..31372607-chr22:31475365..31485377,53	MCF-7	breast:
3	chr22:31352727..31355658-chr22:31478045..31481685,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183963	Chromatin interaction
ENSG00000273387	Chromatin interaction
ENSG00000133422	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1003480	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1005252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10854601	0.90[YRI][hapmap]
rs11089484	0.83[AFR][1000 genomes]
rs2074578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2240175	0.93[YRI][hapmap]
rs2240177	1.00[YRI][hapmap]
rs2240179	0.97[YRI][hapmap];0.83[AFR][1000 genomes]
rs2240180	0.93[YRI][hapmap]
rs2240182	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2240183	0.97[YRI][hapmap]
rs3747151	1.00[YRI][hapmap]
rs3788426	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs3804085	0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs4820916	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs5749186	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5749194	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5749195	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5753369	0.94[CHB][hapmap];0.93[YRI][hapmap]
rs5753388	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5753389	0.81[AFR][1000 genomes]
rs5753392	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5753394	0.93[YRI][hapmap]
rs5753398	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5753407	0.81[CHB][hapmap];0.97[YRI][hapmap];0.83[AFR][1000 genomes]
rs5753408	0.97[YRI][hapmap]
rs5753410	0.97[YRI][hapmap];0.80[AFR][1000 genomes]
rs5997830	0.97[YRI][hapmap]
rs5997838	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs5997846	0.92[CEU][hapmap];0.96[YRI][hapmap]
rs722683	0.80[AFR][1000 genomes]
rs722684	0.80[AFR][1000 genomes]
rs7284767	1.00[YRI][hapmap]
rs7291077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7291199	0.83[AFR][1000 genomes]
rs7291361	0.97[YRI][hapmap];0.81[AFR][1000 genomes]
rs737924	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs739896	0.84[YRI][hapmap]
rs8135974	0.97[YRI][hapmap];0.81[AFR][1000 genomes]
rs9609183	0.88[YRI][hapmap]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31317600-31364000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:31319800-31355800	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr22:31320000-31355600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr22:31320200-31355600	Strong transcription	H1 Cell Line	embryonic stem cell
5	chr22:31320200-31355800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr22:31324800-31360400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr22:31342400-31361000	Weak transcription	Small Intestine	intestine
8	chr22:31343800-31356400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr22:31344600-31363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr22:31344800-31361600	Weak transcription	Fetal Heart	heart
11	chr22:31345400-31364000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr22:31345600-31364200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr22:31346000-31364400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr22:31346200-31364200	Weak transcription	Brain Substantia Nigra	brain
15	chr22:31346600-31356600	Weak transcription	Colonic Mucosa	Colon
16	chr22:31346800-31355400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr22:31347200-31363000	Weak transcription	Colon Smooth Muscle	Colon
18	chr22:31347200-31364400	Weak transcription	Esophagus	oesophagus
19	chr22:31347400-31359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr22:31347400-31362400	Weak transcription	Gastric	stomach
21	chr22:31347400-31362400	Weak transcription	Lung	lung
22	chr22:31347400-31363000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr22:31347400-31363800	Weak transcription	NHLF	lung
24	chr22:31347600-31359400	Weak transcription	Pancreas	Pancrea
25	chr22:31347600-31363000	Weak transcription	Spleen	Spleen
26	chr22:31347600-31363400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr22:31347600-31363400	Weak transcription	HMEC	breast
28	chr22:31347600-31364000	Weak transcription	Fetal Kidney	kidney
29	chr22:31347800-31355800	Weak transcription	GM12878-XiMat	blood
30	chr22:31348000-31358200	Weak transcription	Fetal Intestine Small	intestine
31	chr22:31348600-31362800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr22:31348800-31363000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr22:31348800-31363800	Weak transcription	Brain Angular Gyrus	brain
34	chr22:31348800-31364000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr22:31349000-31363000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr22:31349000-31364400	Weak transcription	Aorta	Aorta
37	chr22:31349200-31355400	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr22:31349200-31359600	Weak transcription	K562	blood
39	chr22:31349200-31360400	Weak transcription	Hela-S3	cervix
40	chr22:31349200-31363600	Weak transcription	Brain Hippocampus Middle	brain
41	chr22:31349200-31364200	Weak transcription	Thymus	Thymus
42	chr22:31349400-31359800	Weak transcription	Dnd41	blood
43	chr22:31349400-31364400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr22:31349600-31359800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr22:31349800-31360000	Weak transcription	Right Ventricle	heart
46	chr22:31349800-31363800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr22:31349800-31363800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr22:31349800-31363800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr22:31349800-31363800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr22:31349800-31364200	Weak transcription	Brain Inferior Temporal Lobe	brain

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