Variant report

Variant	rs2240445
Chromosome Location	chr7:107706895-107706896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2108234	0.81[CHB][hapmap]
rs2286251	0.91[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1017114	chr7:107692403-107720162	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107698600-107720000	Weak transcription	Right Atrium	heart
2	chr7:107700200-107708400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:107700800-107733600	Weak transcription	Pancreas	Pancrea
4	chr7:107701000-107710000	Weak transcription	Adipose Nuclei	Adipose
5	chr7:107703600-107708400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:107706000-107708400	Enhancers	K562	blood
7	chr7:107706200-107707200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:107706600-107707000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:107706600-107707200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:107706600-107707200	Enhancers	Placenta	Placenta
11	chr7:107706600-107707800	Enhancers	HUVEC	blood vessel
12	chr7:107706800-107707000	Enhancers	Fetal Muscle Leg	muscle
13	chr7:107706800-107707200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:107706800-107707200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:107706800-107707200	Enhancers	Hela-S3	cervix
16	chr7:107706800-107707200	Flanking Bivalent TSS/Enh	HepG2	liver
17	chr7:107706800-107707200	Enhancers	NH-A	brain
18	chr7:107706800-107707800	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links