Variant report

Variant	rs2108234
Chromosome Location	chr7:107721747-107721748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107719530..107722382-chr7:107729681..107732039,2	MCF-7	breast:
2	chr7:107721046..107722775-chr7:107733495..107735609,2	K562	blood:
3	chr7:107719784..107721782-chr7:107727829..107731774,3	K562	blood:
4	chr7:107720738..107723216-chr7:107724069..107727011,3	K562	blood:
5	chr7:107721046..107723696-chr7:107732715..107735609,4	K562	blood:
6	chr7:107699191..107701387-chr7:107720831..107722439,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10487838	1.00[CEU][hapmap]
rs10487840	1.00[CEU][hapmap]
rs17155042	1.00[CEU][hapmap]
rs2074748	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2240445	0.81[CHB][hapmap]
rs378641	0.80[AFR][1000 genomes]
rs6466216	1.00[CEU][hapmap]
rs67869926	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67998807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197608	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73197619	0.82[ASN][1000 genomes]
rs9691506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107700800-107733600	Weak transcription	Pancreas	Pancrea
2	chr7:107717000-107722000	Enhancers	Fetal Stomach	stomach
3	chr7:107717600-107722000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr7:107718200-107721800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:107718200-107722400	Enhancers	Small Intestine	intestine
6	chr7:107718400-107722200	Enhancers	Fetal Intestine Small	intestine
7	chr7:107718600-107721800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:107718600-107721800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:107718600-107722000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:107718600-107722000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:107718600-107722200	Enhancers	Fetal Intestine Large	intestine
12	chr7:107719200-107721800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr7:107719800-107722400	Enhancers	HepG2	liver
14	chr7:107720200-107722200	Enhancers	NHLF	lung
15	chr7:107720400-107725000	Weak transcription	Ovary	ovary
16	chr7:107720600-107732000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:107720800-107721800	Enhancers	Duodenum Mucosa	Duodenum
18	chr7:107720800-107724400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:107721000-107724200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:107721000-107734400	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:107721400-107721800	Enhancers	Fetal Muscle Trunk	muscle
22	chr7:107721400-107722000	Enhancers	Liver	Liver
23	chr7:107721400-107722200	Enhancers	Adipose Nuclei	Adipose
24	chr7:107721400-107724000	Weak transcription	HUVEC	blood vessel
25	chr7:107721600-107721800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:107721600-107722000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:107721600-107722200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:107721600-107722400	ZNF genes & repeats	K562	blood

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