Variant report

Variant	rs67869926
Chromosome Location	chr7:107734659-107734660
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:107519333..107521825-chr7:107734297..107736000,2	MCF-7	breast:
2	chr7:107733842..107736085-chr7:107740021..107742825,3	K562	blood:
3	chr7:106808278..106810182-chr7:107734239..107736239,2	K562	blood:
4	chr7:107724811..107727810-chr7:107733996..107735648,2	K562	blood:
5	chr7:107729735..107732535-chr7:107733604..107735745,3	K562	blood:
6	chr7:107721046..107722775-chr7:107733495..107735609,2	K562	blood:
7	chr7:107721046..107723696-chr7:107732715..107735609,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2074748	0.82[ASN][1000 genomes]
rs2108234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67998807	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197608	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73197619	0.82[ASN][1000 genomes]
rs9691506	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107726600-107735600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:107731400-107735000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:107732400-107739600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:107732600-107735400	Weak transcription	Placenta	Placenta
5	chr7:107733200-107735400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:107733400-107737000	Enhancers	Fetal Lung	lung
7	chr7:107733600-107735000	Enhancers	Right Atrium	heart
8	chr7:107733600-107735200	Weak transcription	Fetal Heart	heart
9	chr7:107733600-107736200	Enhancers	Left Ventricle	heart
10	chr7:107733600-107736400	Enhancers	Ovary	ovary
11	chr7:107733800-107735400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:107733800-107736600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:107734000-107734800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:107734000-107735400	Enhancers	HUVEC	blood vessel
15	chr7:107734200-107734800	Flanking Active TSS	NHLF	lung
16	chr7:107734200-107735000	Enhancers	Pancreas	Pancrea
17	chr7:107734200-107735000	Enhancers	A549	lung
18	chr7:107734200-107735200	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr7:107734200-107735600	Enhancers	Liver	Liver
20	chr7:107734200-107735600	Enhancers	NH-A	brain
21	chr7:107734200-107736400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:107734200-107736400	Enhancers	HMEC	breast
23	chr7:107734200-107736600	Enhancers	HSMM	muscle
24	chr7:107734200-107737200	Enhancers	Fetal Stomach	stomach
25	chr7:107734400-107734800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:107734400-107734800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:107734400-107734800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:107734400-107734800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:107734400-107734800	Flanking Active TSS	NHDF-Ad	bronchial
30	chr7:107734400-107735000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:107734400-107735000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr7:107734400-107735000	Enhancers	Gastric	stomach
33	chr7:107734400-107735600	Enhancers	Fetal Kidney	kidney
34	chr7:107734400-107735600	Enhancers	HepG2	liver
35	chr7:107734400-107735600	Enhancers	HSMMtube	muscle
36	chr7:107734400-107735800	Enhancers	Rectal Smooth Muscle	rectum
37	chr7:107734400-107735800	Enhancers	Right Ventricle	heart
38	chr7:107734400-107736200	Enhancers	Fetal Muscle Leg	muscle
39	chr7:107734400-107736400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:107734400-107736400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr7:107734400-107736400	Enhancers	Adipose Nuclei	Adipose
42	chr7:107734400-107736600	Enhancers	Colon Smooth Muscle	Colon
43	chr7:107734400-107736600	Enhancers	Fetal Intestine Large	intestine
44	chr7:107734400-107736600	Enhancers	K562	blood
45	chr7:107734600-107734800	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr7:107734600-107734800	Enhancers	Osteobl	bone
47	chr7:107734600-107735400	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr7:107734600-107735400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr7:107734600-107735600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr7:107734600-107735600	Weak transcription	Lung	lung

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