Variant report

Variant	rs9691506
Chromosome Location	chr7:107720870-107720871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107712773..107718092-chr7:107719257..107721672,4	K562	blood:
2	chr7:107719530..107722382-chr7:107729681..107732039,2	MCF-7	breast:
3	chr7:107719784..107721782-chr7:107727829..107731774,3	K562	blood:
4	chr7:107720738..107723216-chr7:107724069..107727011,3	K562	blood:
5	chr7:107714760..107717212-chr7:107718559..107721674,3	K562	blood:
6	chr7:107699191..107701387-chr7:107720831..107722439,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10487838	1.00[CEU][hapmap]
rs10487840	1.00[CEU][hapmap]
rs17155042	1.00[CEU][hapmap]
rs2074748	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap]
rs2108234	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2286251	0.85[JPT][hapmap]
rs6466216	1.00[CEU][hapmap]
rs67869926	0.92[ASN][1000 genomes]
rs67998807	0.92[ASN][1000 genomes]
rs73197603	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107700800-107733600	Weak transcription	Pancreas	Pancrea
2	chr7:107716600-107721000	Enhancers	Fetal Lung	lung
3	chr7:107717000-107722000	Enhancers	Fetal Stomach	stomach
4	chr7:107717600-107722000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr7:107718200-107721800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:107718200-107722400	Enhancers	Small Intestine	intestine
7	chr7:107718400-107721000	Enhancers	Stomach Mucosa	stomach
8	chr7:107718400-107721200	Enhancers	Rectal Smooth Muscle	rectum
9	chr7:107718400-107722200	Enhancers	Fetal Intestine Small	intestine
10	chr7:107718600-107721000	Enhancers	Adipose Nuclei	Adipose
11	chr7:107718600-107721200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr7:107718600-107721200	Enhancers	Fetal Muscle Leg	muscle
13	chr7:107718600-107721200	Enhancers	NHDF-Ad	bronchial
14	chr7:107718600-107721200	Enhancers	Osteobl	bone
15	chr7:107718600-107721800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:107718600-107721800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:107718600-107722000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:107718600-107722000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:107718600-107722200	Enhancers	Fetal Intestine Large	intestine
20	chr7:107718800-107721000	Enhancers	Stomach Smooth Muscle	stomach
21	chr7:107718800-107721400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:107718800-107721400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr7:107719000-107721600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:107719200-107721800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr7:107719400-107721000	Enhancers	Colon Smooth Muscle	Colon
26	chr7:107719800-107721000	Enhancers	HSMM	muscle
27	chr7:107719800-107722400	Enhancers	HepG2	liver
28	chr7:107720000-107721000	Flanking Active TSS	HUVEC	blood vessel
29	chr7:107720000-107721000	Flanking Active TSS	NH-A	brain
30	chr7:107720200-107721200	Flanking Active TSS	K562	blood
31	chr7:107720200-107721600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:107720200-107722200	Enhancers	NHLF	lung
33	chr7:107720400-107721200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:107720400-107721400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr7:107720400-107725000	Weak transcription	Ovary	ovary
36	chr7:107720600-107732000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr7:107720800-107721800	Enhancers	Duodenum Mucosa	Duodenum
38	chr7:107720800-107724400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links