Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:107744231..107746963-chr7:107748400..107751229,2	MCF-7	breast:
2	chr7:107741696..107745542-chr7:107745790..107752287,8	K562	blood:
3	chr7:107736265..107740487-chr7:107741777..107745446,6	K562	blood:
4	chr7:107743149..107746121-chr7:107770515..107772885,2	K562	blood:

Variant related genes	Relation type
ENSG00000091128	Chromatin interaction

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10487838	1.00[CEU][hapmap]
rs10487840	1.00[CEU][hapmap]
rs17155042	1.00[CEU][hapmap]
rs2108234	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6466216	1.00[CEU][hapmap]
rs67869926	0.82[ASN][1000 genomes]
rs67998807	0.82[ASN][1000 genomes]
rs73197603	0.82[ASN][1000 genomes]
rs73197608	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73197610	0.90[EUR][1000 genomes]
rs73197619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197623	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73725339	0.92[AFR][1000 genomes]
rs9691506	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107736200-107753400	Weak transcription	Right Atrium	heart
2	chr7:107736400-107756400	Weak transcription	Pancreas	Pancrea
3	chr7:107736600-107747400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:107741000-107748000	Weak transcription	Small Intestine	intestine
5	chr7:107743200-107745200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:107743200-107745200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:107743200-107745200	Enhancers	Placenta	Placenta
8	chr7:107743200-107745600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:107743200-107745600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:107743400-107745200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:107743600-107747600	Weak transcription	Fetal Intestine Small	intestine
12	chr7:107743800-107745600	Enhancers	Fetal Stomach	stomach
13	chr7:107744000-107745200	Enhancers	NHDF-Ad	bronchial
14	chr7:107744400-107745200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:107744600-107745600	Enhancers	Fetal Muscle Leg	muscle
16	chr7:107744800-107745400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:107745000-107745400	Weak transcription	Aorta	Aorta
18	chr7:107745000-107745600	Enhancers	K562	blood
19	chr7:107745000-107747400	Weak transcription	NHLF	lung
20	chr7:107745000-107748600	Weak transcription	A549	lung
21	chr7:107745000-107762600	Weak transcription	Fetal Lung	lung

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