Variant report

Variant	rs73197623
Chromosome Location	chr7:107751369-107751370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10487838	0.81[ASN][1000 genomes]
rs10487840	0.83[AMR][1000 genomes]
rs2074748	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6466216	0.81[ASN][1000 genomes]
rs73197603	0.83[AMR][1000 genomes]
rs73197608	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73197610	0.90[EUR][1000 genomes]
rs73197619	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73197625	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73197627	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73197628	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107736200-107753400	Weak transcription	Right Atrium	heart
2	chr7:107736400-107756400	Weak transcription	Pancreas	Pancrea
3	chr7:107745000-107762600	Weak transcription	Fetal Lung	lung
4	chr7:107747800-107760800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:107748200-107752800	Weak transcription	Left Ventricle	heart
6	chr7:107748400-107753200	Weak transcription	Small Intestine	intestine
7	chr7:107750200-107752800	Weak transcription	Adipose Nuclei	Adipose
8	chr7:107750200-107753200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:107750200-107754800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:107750400-107754000	Weak transcription	Fetal Intestine Small	intestine
11	chr7:107751200-107751400	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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