Variant report

Variant	rs67998807
Chromosome Location	chr7:107729895-107729896
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107719784..107721782-chr7:107727829..107731774,3	K562	blood:
2	chr7:107729735..107732535-chr7:107733604..107735745,3	K562	blood:
3	chr7:107724804..107726471-chr7:107729180..107731938,2	MCF-7	breast:
4	chr7:107729546..107731523-chr7:107740327..107742242,2	K562	blood:
5	chr7:107401259..107403795-chr7:107728540..107730917,2	MCF-7	breast:
6	chr7:107719530..107722382-chr7:107729681..107732039,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2074748	0.82[ASN][1000 genomes]
rs2108234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67869926	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197608	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73197619	0.82[ASN][1000 genomes]
rs9691506	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107700800-107733600	Weak transcription	Pancreas	Pancrea
2	chr7:107720600-107732000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:107721000-107734400	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:107724600-107734400	Weak transcription	Right Ventricle	heart
5	chr7:107726600-107735600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:107727600-107730400	Enhancers	Fetal Intestine Large	intestine
7	chr7:107728000-107730400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:107728000-107734400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:107728200-107733600	Weak transcription	NHDF-Ad	bronchial
10	chr7:107728400-107734400	Weak transcription	HSMMtube	muscle
11	chr7:107729000-107731400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:107729200-107730200	Enhancers	Fetal Intestine Small	intestine
13	chr7:107729400-107730000	Enhancers	A549	lung
14	chr7:107729400-107730200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:107729400-107730200	Enhancers	Placenta	Placenta
16	chr7:107729600-107730200	Flanking Active TSS	K562	blood
17	chr7:107729600-107731800	Weak transcription	HepG2	liver
18	chr7:107729600-107733200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:107729600-107734400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:107729800-107733200	Weak transcription	NHLF	lung
21	chr7:107729800-107734200	Weak transcription	HMEC	breast
22	chr7:107729800-107734400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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