Variant report

Variant	rs2240846
Chromosome Location	chr7:38358600-38358601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:240)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:240 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:38358560-38358710	HPF	lung:	n/a	n/a
2	TEAD4	chr7:38358336-38358667	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr7:38358490-38358731	Hela-S3	cervix:	n/a	n/a
4	CTCF	chr7:38358520-38358670	AG10803	skin:	n/a	n/a
5	USF1	chr7:38358488-38358828	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr7:38358520-38358670	GM12870	blood:	n/a	n/a
7	CTCF	chr7:38358560-38358710	GM12867	blood:	n/a	n/a
8	CTCF	chr7:38358481-38358729	GM19239	blood:	n/a	n/a
9	CTCF	chr7:38358322-38358786	MCF-7	breast:	n/a	n/a
10	CTCF	chr7:38358492-38358706	Kidney_OC	kidney:	n/a	n/a
11	CTCF	chr7:38358500-38358650	HRPEpiC	eye:	n/a	n/a
12	EBF1	chr7:38358407-38358919	GM12878	blood:	n/a	chr7:38358696-38358707
13	FOS	chr7:38358508-38358689	MCF10A-Er-Src	breast:	n/a	n/a
14	ZNF263	chr7:38358363-38358871	HEK293-T-REx	kidney:	n/a	n/a
15	MAZ	chr7:38358561-38358670	HepG2	liver:	n/a	n/a
16	CTCF	chr7:38358540-38358690	HEEpiC	esophagus:	n/a	n/a
17	TCF12	chr7:38358489-38358783	H1-hESC	embryonic stem cell:	n/a	n/a
18	CTCF	chr7:38358520-38358670	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr7:38358560-38358710	NHDF-neo	bronchial:	n/a	n/a
20	CTCF	chr7:38358478-38358750	LNCaP	prostate:	n/a	n/a
21	ZNF143	chr7:38358429-38358777	GM12878	blood:	n/a	n/a
22	ELK1	chr7:38358428-38358798	GM12878	blood:	n/a	n/a
23	CTCF	chr7:38358479-38358732	A549	lung:	n/a	n/a
24	RAD21	chr7:38358264-38358831	HCT-116	colon:	n/a	chr7:38358265-38358272
25	TEAD4	chr7:38358208-38358809	H1-hESC	embryonic stem cell:	n/a	n/a
26	YY1	chr7:38358326-38358750	H1-hESC	embryonic stem cell:	n/a	n/a
27	RAD21	chr7:38358440-38358707	HepG2	liver:	n/a	n/a
28	CTCF	chr7:38358520-38358670	GM12801	blood:	n/a	n/a
29	RCOR1	chr7:38358381-38358727	K562	blood:	n/a	n/a
30	MAZ	chr7:38358353-38358806	K562	blood:	n/a	chr7:38358377-38358387
31	FOXA2	chr7:38358473-38358727	HepG2	liver:	n/a	n/a
32	CTCF	chr7:38358540-38358690	AG09319	gingival:	n/a	n/a
33	CTCF	chr7:38358540-38358690	GM06990	blood:	n/a	n/a
34	CTCF	chr7:38358480-38358630	HCM	heart:	n/a	n/a
35	CTCF	chr7:38358540-38358690	HRPEpiC	eye:	n/a	n/a
36	TBL1XR1	chr7:38358558-38358707	K562	blood:	n/a	n/a
37	RAD21	chr7:38358436-38358752	HepG2	liver:	n/a	n/a
38	CTCF	chr7:38358540-38358690	GM12871	blood:	n/a	n/a
39	CTCF	chr7:38358520-38358670	GM12872	blood:	n/a	n/a
40	ATF1	chr7:38358478-38358765	K562	blood:	n/a	n/a
41	ELK1	chr7:38358438-38358717	K562	blood:	n/a	n/a
42	CTCF	chr7:38358540-38358690	HMEC	breast:	n/a	n/a
43	JUND	chr7:38358363-38358800	H1-hESC	embryonic stem cell:	n/a	chr7:38358401-38358411
44	CTCF	chr7:38358504-38358715	HepG2	liver:	n/a	n/a
45	CTCF	chr7:38358485-38358734	ProgFib	skin:	n/a	n/a
46	CTCF	chr7:38358560-38358710	GM12868	blood:	n/a	n/a
47	CTCF	chr7:38358520-38358670	GM12873	blood:	n/a	n/a
48	CTCF	chr7:38358580-38358730	MCF-7	breast:	n/a	n/a
49	TCF12	chr7:38358438-38358716	H1-hESC	embryonic stem cell:	n/a	n/a
50	CTCF	chr7:38358462-38358731	GM19238	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:38357958..38360447-chr7:38360808..38363317,4	K562	blood:
2	chr7:38145396..38146142-chr7:38358527..38359113,2	MCF-7	breast:
3	chr7:37940728..37941537-chr7:38358496..38359055,2	MCF-7	breast:

No data

Variant related genes	Relation type
TRGV9	TF binding region
ENSG00000225992	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2240844	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2240845	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs2534563	0.95[EUR][1000 genomes]
rs2534564	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs2534567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2534568	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2736956	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:93 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2758112	chr7:38218703-38523455	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	esv2759524	chr7:38218703-38523455	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv427776	chr7:38218703-38523455	Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv830964	chr7:38218708-38390518	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	nsv1030349	chr7:38227528-38372719	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv538818	chr7:38227528-38372719	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv1025974	chr7:38227528-38503472	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
9	nsv538819	chr7:38227528-38503472	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
10	nsv433041	chr7:38229107-38358728	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	nsv433044	chr7:38238119-38358728	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	nsv1027803	chr7:38257707-38410660	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
14	nsv538820	chr7:38257707-38410660	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
15	nsv1020990	chr7:38257707-38503472	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
16	nsv433045	chr7:38259354-38358728	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
17	nsv870213	chr7:38261012-38382508	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
18	esv29985	chr7:38268395-38358728	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
19	nsv433048	chr7:38268395-38358728	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
20	nsv433062	chr7:38268395-38371334	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
21	nsv433054	chr7:38268395-38403367	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
22	nsv433049	chr7:38268395-38404971	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
23	esv1793647	chr7:38269292-38383243	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
24	esv1804547	chr7:38269292-38383243	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
25	esv1822202	chr7:38269292-38383243	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
26	esv1827702	chr7:38269292-38383243	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
27	esv1838074	chr7:38269292-38383243	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
28	esv1849699	chr7:38269292-38383243	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
29	nsv433070	chr7:38271544-38358728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
30	nsv433072	chr7:38271544-38371334	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
31	esv2755783	chr7:38271544-38404971	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
32	esv1000823	chr7:38271623-38390120	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
33	nsv464431	chr7:38273305-38361625	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
34	nsv606625	chr7:38273305-38361625	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
35	esv33146	chr7:38288048-38406196	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
36	nsv824068	chr7:38288300-38370429	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
37	nsv820039	chr7:38289515-38411222	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
38	nsv824069	chr7:38290446-38370867	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
39	nsv824070	chr7:38290446-38378882	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
40	nsv1023211	chr7:38290714-38366512	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
41	nsv824072	chr7:38293736-38371145	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
42	nsv824073	chr7:38293736-38380752	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
43	nsv824074	chr7:38293736-38404608	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
44	esv2757222	chr7:38294079-38418165	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
45	nsv1022757	chr7:38294089-38358956	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
46	nsv1033516	chr7:38294089-38366512	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
47	nsv1016366	chr7:38294089-38387431	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
48	nsv1016455	chr7:38294089-38402496	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
49	nsv433090	chr7:38294114-38358728	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
50	nsv433085	chr7:38294114-38371334	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38351600-38358600	Weak transcription	Fetal Kidney	kidney
2	chr7:38351600-38358800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr7:38351600-38363800	Weak transcription	Right Atrium	heart
4	chr7:38353000-38358600	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:38353000-38359000	Weak transcription	GM12878-XiMat	blood
6	chr7:38353000-38360800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:38353200-38358600	Weak transcription	Primary T cells from cord blood	blood
8	chr7:38353600-38360800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:38355600-38358600	Enhancers	Placenta	Placenta
10	chr7:38355600-38358800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:38355800-38359000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:38356600-38358800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr7:38357000-38359200	Enhancers	Primary B cells from cord blood	blood
14	chr7:38357200-38358600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:38357200-38358600	Enhancers	Fetal Muscle Leg	muscle
16	chr7:38357200-38359200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr7:38357400-38358800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:38357400-38358800	Weak transcription	Thymus	Thymus
19	chr7:38357400-38359600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:38357400-38362200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr7:38357600-38358600	Enhancers	Adipose Nuclei	Adipose
22	chr7:38357600-38358600	Enhancers	Fetal Stomach	stomach
23	chr7:38357600-38358800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:38357600-38359000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr7:38357600-38362800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr7:38357800-38359200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr7:38358000-38358600	Enhancers	H9 Cell Line	embryonic stem cell
28	chr7:38358000-38358600	Enhancers	Brain Cingulate Gyrus	brain
29	chr7:38358000-38358600	Enhancers	HUVEC	blood vessel
30	chr7:38358000-38358600	Enhancers	Osteobl	bone
31	chr7:38358000-38359000	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr7:38358000-38359200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr7:38358200-38358600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr7:38358200-38358600	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr7:38358200-38358600	Enhancers	A549	lung
36	chr7:38358200-38358800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr7:38358200-38358800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:38358200-38358800	Enhancers	NH-A	brain
39	chr7:38358200-38359000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr7:38358200-38359000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr7:38358200-38359800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr7:38358200-38360000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr7:38358200-38361800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr7:38358200-38362000	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr7:38358400-38358600	Enhancers	Brain Hippocampus Middle	brain
46	chr7:38358400-38358600	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr7:38358400-38359000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr7:38358400-38359400	Enhancers	Primary B cells from peripheral blood	blood
49	chr7:38358400-38360600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:38358400-38360800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links