Variant report

Variant	rs2240902
Chromosome Location	chr17:34069578-34069579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10512473	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12604052	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1531057	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap]
rs16971128	1.00[CEU][hapmap]
rs16971271	0.82[EUR][1000 genomes]
rs16971437	0.82[EUR][1000 genomes]
rs2240903	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs3785762	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3826401	0.82[EUR][1000 genomes]
rs3826403	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56135703	0.82[EUR][1000 genomes]
rs72625914	0.82[EUR][1000 genomes]
rs73990293	0.98[ASN][1000 genomes]
rs8081740	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34068800-34077200	Weak transcription	Right Atrium	heart
2	chr17:34069000-34074400	Weak transcription	Spleen	Spleen
3	chr17:34069200-34069600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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