Variant report

Variant	rs56135703
Chromosome Location	chr17:34073301-34073302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10512473	1.00[AMR][1000 genomes]
rs12604052	1.00[AMR][1000 genomes]
rs2240902	0.82[EUR][1000 genomes]
rs2240903	1.00[AMR][1000 genomes]
rs2242596	1.00[AFR][1000 genomes]
rs2280786	1.00[AFR][1000 genomes]
rs2280788	1.00[AFR][1000 genomes]
rs2293789	1.00[AFR][1000 genomes]
rs28914816	1.00[AFR][1000 genomes]
rs28914817	1.00[AFR][1000 genomes]
rs28914819	1.00[AFR][1000 genomes]
rs3826403	0.82[EUR][1000 genomes]
rs3826454	1.00[AFR][1000 genomes]
rs55781042	1.00[AFR][1000 genomes]
rs55833673	1.00[AFR][1000 genomes]
rs55906604	1.00[AFR][1000 genomes]
rs55915639	1.00[AFR][1000 genomes]
rs55951822	1.00[AFR][1000 genomes]
rs56029903	1.00[AFR][1000 genomes]
rs56077005	1.00[AFR][1000 genomes]
rs56111312	1.00[AFR][1000 genomes]
rs56170514	1.00[AFR][1000 genomes]
rs56221144	1.00[AFR][1000 genomes]
rs56262662	1.00[AFR][1000 genomes]
rs56305516	1.00[AFR][1000 genomes]
rs56347933	1.00[AFR][1000 genomes]
rs56382694	1.00[AFR][1000 genomes]
rs72483217	1.00[AFR][1000 genomes]
rs8081740	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34068800-34077200	Weak transcription	Right Atrium	heart
2	chr17:34069000-34074400	Weak transcription	Spleen	Spleen
3	chr17:34071000-34079800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:34072200-34075000	Weak transcription	Esophagus	oesophagus
5	chr17:34073200-34074200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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